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TFB1M

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
TFB1M
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4GC5,4GC9

Identifiers
AliasesTFB1M, CGI75, mtTFB, mtTFB1, CGI-75, transcription factor B1, mitochondrial
External IDsOMIM:607033;MGI:2146851;HomoloGene:9343;GeneCards:TFB1M;OMA:TFB1M - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for TFB1M
Genomic location for TFB1M
Band6q25.3Start155,256,134bp[1]
End155,314,493bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for TFB1M
Genomic location for TFB1M
Band17|17 A1Start3,569,531bp[2]
End3,608,056bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right adrenal gland

  • right adrenal cortex

  • left adrenal gland

  • left adrenal cortex

  • left testis

  • right testis

  • right lobe of liver

  • testicle

  • Achilles tendon

  • mucosa of transverse colon
Top expressed in
  • lumbar spinal ganglion

  • primary oocyte

  • seminiferous tubule

  • zygote

  • Paneth cell

  • lacrimal gland

  • endocardial cushion

  • secondary oocyte

  • left lobe of liver

  • atrioventricular junction
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51106

224481

Ensembl

ENSG00000029639

ENSMUSG00000036983

UniProt

Q8WVM0

Q8JZM0

RefSeq (mRNA)

NM_016020
NM_001350501
NM_001350502

NM_146074

RefSeq (protein)

NP_057104
NP_001337430
NP_001337431

NP_666186

Location (UCSC)Chr 6: 155.26 – 155.31 MbChr 17: 3.57 – 3.61 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Dimethyladenosine transferase 1, mitochondrial; Transcription factor B1, mitochondrial is a mitochondrialenzyme that is encoded by theTFB1Mgene.[5][6][7]

TFB1M is a mitochondrial methyltransferase, which usesS-adenosyl methionine to dimethylate two highly conservedadenosine residues at the 3'-end of the mitochondrial12S rRNA thereby regulating the assembly or stability of the small subunit of the mitochondrial ribosome.[6][8][9]

Additionally, TFB1M has been demonstrated to stimulate transcription from promoter templates in anin vitro system containing recombinant mitochondrial RNA polymerase andTFAM.[10] There are no experimental data demonstrating that this function occursin vivo; the paralogousTFB2M is more specific for this role.[11]

Interactions

[edit]

TFB1M has been shown tointeract withTFAM.[12]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000029639Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000036983Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W (Aug 2000)."Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics".Genome Res.10 (5):703–13.doi:10.1101/gr.10.5.703.PMC 310876.PMID 10810093.
  6. ^abMcCulloch V, Seidel-Rogol BL, Shadel GS (Jan 2002)."A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine".Mol Cell Biol.22 (4):1116–25.doi:10.1128/MCB.22.4.1116-1125.2002.PMC 134642.PMID 11809803.
  7. ^"Entrez Gene: TFB1M transcription factor B1, mitochondrial".
  8. ^Falkenberg M, Gaspari M, Rantanen A, et al. (2002). "Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA".Nat. Genet.31 (3):289–94.doi:10.1038/ng909.PMID 12068295.S2CID 11164308.
  9. ^Metodiev MD; Lesko N; Park CB; Camara Y.; Shi Y.; Wibom R.; Hultenby K.; Gustafsson CM; Larsson NG. (Apr 2009)."Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome".Cell Metab.9 (4):386–97.doi:10.1016/j.cmet.2009.03.001.PMID 19356719.
  10. ^Falkenberg M, Gaspari M, Rantanen A, et al. (2002). "Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA".Nat. Genet.31 (3):289–94.doi:10.1038/ng909.PMID 12068295.S2CID 11164308.
  11. ^Hillen, HS; Morozov, YI; Sarfallah, A; Temiakov, D; Cramer, P (16 November 2017)."Structural Basis of Mitochondrial Transcription Initiation".Cell.171 (5): 1072–1081.e10.doi:10.1016/j.cell.2017.10.036.PMC 6590061.PMID 29149603.
  12. ^McCulloch, Vicki; Shadel Gerald S (Aug 2003)."Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity".Mol. Cell. Biol.23 (16):5816–24.doi:10.1128/MCB.23.16.5816-5824.2003.ISSN 0270-7306.PMC 166325.PMID 12897151.

Further reading

[edit]


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