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TFAP2C

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
TFAP2C
Identifiers
AliasesTFAP2C, AP2-GAMMA, ERF1, TFAP2G, hAP-2g, transcription factor AP-2 gamma
External IDsOMIM:601602;MGI:106032;HomoloGene:2423;GeneCards:TFAP2C;OMA:TFAP2C - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for TFAP2C
Genomic location for TFAP2C
Band20q13.31Start56,629,306bp[1]
End56,639,283bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for TFAP2C
Genomic location for TFAP2C
Band2|2 H3Start172,391,513bp[2]
End172,400,542bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ventricular zone

  • epithelium of lactiferous gland

  • lactiferous duct

  • skin of thigh

  • vulva

  • skin of hip

  • gingival epithelium

  • hair follicle

  • skin of arm

  • buccal mucosa cell
Top expressed in
  • conjunctival fornix

  • hair follicle

  • decidua

  • otic placode

  • gastrula

  • maxillary prominence

  • ventricular zone

  • primitive streak

  • condyle

  • lactiferous gland
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7022

21420

Ensembl

ENSG00000087510

ENSMUSG00000028640

UniProt

Q92754

Q61312

RefSeq (mRNA)

NM_003222

NM_001159696
NM_009335

RefSeq (protein)

NP_003213

NP_001153168
NP_033361

Location (UCSC)Chr 20: 56.63 – 56.64 MbChr 2: 172.39 – 172.4 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor AP-2 gamma also known asAP2-gamma is aprotein that in humans is encoded by theTFAP2Cgene.[5] AP2-gamma is a member of theactivating protein 2 family oftranscription factors.

Transcription factor AP-2 gamma is involved in early development, specifically morphogenesis - the formation of shape. AP2-gamma can regulate gene transcription by interacting with viral and cellular enhancing components and binding to the sequence 5'-GCCNNNGGC-3’. AP2-gamma activates genes that are important for placenta development and retinoic acid-mediated differentiation of the eyes, face, body wall, limbs, and neural tube. AP2-gamma also suppresses genes such as MYC and C/EBP alpha. It also represses CD44 expression, which is a cell marker for some breast and prostate cancers. Mutations of this transcription factor can lead to poorly developed placenta and tissues. A mutated AP2-gamma gene is known to cause branchiooculofacial syndrome (BOFS), which is a disease characterized by face and neck abnormalities, such as cleft lip or anophthalmia – lack of eyeballs, that have developed prior to birth. Complete knockout of the TAP2C gene that encoded AP-2 gamma leads to placenta malformation and embryonic/fetal death.

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000087510Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000028640Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Williamson JA, Bosher JM, Skinner A, Sheer D, Williams T, Hurst HC (July 1996)."Chromosomal mapping of the human and mouse homologues of two new members of the AP-2 family of transcription factors".Genomics.35 (1):262–4.doi:10.1006/geno.1996.0351.PMID 8661133.

Auman, H. J., T. Nottoli, O. Lakiza, Q. Winger, S. Donaldson, and T. Williams. "Transcription Factor AP-2gamma Is Essential in the Extra-embryonic Lineages for EarlyPostimplantation Development." National Center for Biotechnology Information. U.S. National Library of Medicine, June 2002. Web. 15 Apr. 2014.

Bogachek, M. V., and R. J. Weigel. "TFAP2C (transcription Factor AP-2 Gamma (activating Enhancer Binding Protein 2 Gamma))." TFAP2C (transcription Factor AP-2 Gamma(activating Enhancer Binding Protein 2 Gamma)). Oct. 2013. Web. 15 Apr. 2014.

"Branchio-oculo-facial Syndrome." Genetics Home Reference. U.S. National Library of Medicine, 7 Apr. 2014. Web. 15 Apr. 2014.

"Genes and Mapped Phenotypes." National Center for Biotechnology Information. U.S. National Library of Medicine, 12 Apr. 2014. Web. 15 Apr. 2014.

"Transcription Factor AP-2 Gamma - TFAP2C -Homo sapiens (Human)." Transcription Factor AP-2 Gamma - TFAP2C -Homo sapiens (Human). UniProtKB, 19 Mar. 2014. Web. 15 Apr. 2014.

Further reading

[edit]

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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