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TBX21

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
TBX21
Identifiers
AliasesTBX21, T-PET, T-bet, TBET, TBLYM, T-box 21, T-box transcription factor 21, IMD88
External IDsOMIM:604895;MGI:1888984;HomoloGene:8353;GeneCards:TBX21;OMA:TBX21 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for TBX21
Genomic location for TBX21
Band17q21.32Start47,733,236bp[1]
End47,746,122bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for TBX21
Genomic location for TBX21
Band11|11 DStart96,988,897bp[2]
End97,006,157bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • granulocyte

  • blood

  • testicle

  • spleen

  • lymph node

  • bone marrow cell

  • tibialis anterior muscle

  • mucosa of ileum

  • upper lobe of left lung

  • mononuclear cell
Top expressed in
  • female urethra

  • blood

  • olfactory bulb

  • embryo

  • spleen

  • mesenteric lymph nodes

  • spinal ganglia

  • extraocular muscle

  • thymus

  • granulocyte
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

30009

57765

Ensembl

ENSG00000073861

ENSMUSG00000001444

UniProt

Q9UL17

Q9JKD8

RefSeq (mRNA)

NM_013351

NM_019507

RefSeq (protein)

NP_037483

NP_062380

Location (UCSC)Chr 17: 47.73 – 47.75 MbChr 11: 96.99 – 97.01 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

T-box transcription factor TBX21, also called T-bet (T-box expressed in T cells), is aprotein that in humans is encoded by theTBX21gene.[5] Though being for long thought of only as a master regulator of type 1 immune response, T-bet has recently been shown to be implicated in development of various immune cell subsets and maintenance of mucosal homeostasis.[6]

Function

[edit]

This gene is a member of a phylogenetically conserved family of genes that share a commonDNA-binding domain, theT-box. T-box genes encodetranscription factors involved in the regulation of developmental processes. This gene is the human ortholog of mouse Tbx21/Tbet gene. Studies in mouse show that Tbx21 protein is aTh1 cell-specific transcription factor that controls the expression of the hallmark Th1 cytokine, interferon-gamma (IFNg). Expression of the human ortholog also correlates with IFNg expression in Th1 and natural killer cells, suggesting a role for this gene in initiating Th1 lineage development from naive Th precursor cells.[5]

The function of T-bet is best known inT helper cells (Th cells). In naïve Th cells the gene is not constitutively expressed, but can be induced via 2 independent signalling pathways, IFNg-STAT1 andIL-12-STAT4 pathways. Both need to cooperate to reach stable Th1 phenotype. Th1 phenotype is also stabilised by repression of regulators of other Th cell phenotypes (Th2 andTh17). In a typical scenario it is thought that IFNg and T cell receptor (TCR) signalling initiates the expression ofTbet, and once TCR signalling stops, signalling via IL-12 receptor can come to play as it was blocked by repression of expression of one of its receptor subunits (IL12Rb2) by TCR signalling. IL-2 signalling enhances the expression of IL-12R. The 2-step expression of T-bet can be viewed as a safety mechanism of sort, which ensures, that cells commit to the Th1 phenotype only when desired.[6]

T-bet controls transcription of many genes, for example proinflammatory cytokines like lymphotoxin-a, tumour necrosis factor and ifng, which is a hallmark cytokine of type one immunity.[7][6] Certain chemokines are also regulated by T-bet, namelyxcl1,ccl3,ccl4 andchemokine receptorscxcr3,ccr5. The expression of T-bet controlled genes is facilitated by 2 distinct mechanisms:chromatin remodelation via enzyme recruitment and direct binding toenhancer sequences promoting transcription or 3D gene structure supporting transcription. T-bet also recruits othertranscription factors likeHLX,RUNX1,RUNX3 which aid it in setting Th1 transcription profile.[6]

Apart from promoting type 1 immune response (Th1), T-bet also suppresses the other types of immune response. Type 2 immune response (Th2) phenotype is repressed by sequestering of its master regulator,GATA3 away from its target genes.Gata3 expression is further silenced by promotion of silencingepigenetic changes in its region. In addition to that the Th2 specific cytokines are also silenced by binding of T-bet andRUNX3 toil4 silencer region. Type 17 immune response (Th17) phenotype is suppressed byRUNX1 recruitment, which disallows it to mediate Th17 specific genes, likerorc, a Th17 master regulator.Rorc is also silenced by epigenetic changes promoted by T-bet andSTAT4.[6]

T-bet also performs function incytotoxic T cells andB cells. In cytotoxic T cells it promotesIFNg,granzyme B expression and in cooperation with another transcription factorEOMES their maturation. The role of T-bet in B cells seems to be to direct the cell towards type 1 immune response expression profile, which involves secretion ofantibodies IGg1 and IGg3 and is usually elevated during viral infections. These populations of B cells differ from standard ones by their lack of receptors CD21 and CD27, also given that these cells have undergone antibody class switch, they are regarded as memory B cells. These cells have been shown to secrete IFNg and in vitro to polarise naïve T helper cells towards Th1 phenotype. Populations of T-bet positive B cells were also identified in various autoimmune diseases likesystemic lupus erythematosus,Crohn's disease,multiple sclerosis andrheumatoid arthritis.[8]

Role in mucosal homeostasis

[edit]

It has been identified that T-bet contributes to the maintenance of mucosal homeostasis and mucosal immune response. Mice lacking adapative immune cells and T-bet (RAG -/-, T-bet -/-) developed disease similar to humanulcerative colitis (hence the name TRUC), which was later attributed to the outgrowthGram-negative bacteria, namelyHelicobacter typhlonius. The dysbiosis appears to be a consequence of multiple factors, firstly the innate lymphoid cells 1 (ILC1) population and a subset of ILC3s are missing, because the expression of T-bet is needed for their maturation. Secondly, T-bet ablation causes increased levels ofTNF, as its expression is not repressed indendritic cells and immune system is more biased away from Th1.[9]

Role in disease

[edit]

Atherosclerosis

[edit]

Atherosclerosis is an autoimmune disease caused by inflammation and associated infiltration of immune cells in fatty deposits inarteries called atherosclerosis plaques. Th1 cells are responsible for production of proinflammatorycytokines contributing to the progression of the disease by promoting expression of adhesive (e.g.,ICAM1) and homing molecules (mainlyCCR5) needed for cellular migration. Experimental vaccination of patients with peptides derived fromapolipoprotein B, part oflow-density lipoprotein, which is deposited on arterial walls, has shown increasedT regulatory cells (TREGs) andcytotoxic T cells. The vaccination has showed smallerTh1 differentiation, though the mechanism behind it remains unresolved. Currently it is hypothesised that the decrease of Th1 differentiation is caused by the destruction ofdendritic cells presenting autoantigens by cytotoxic T cells and increased differentiation of TREGs suppressing immune response. Taken together T-bet might serve as a potential target in treatment of atherosclerosis.[7]

Asthma

[edit]

The transcription factor encoded by TBX21 is T-bet, which regulates the development of naiveT lymphocytes. Asthma is a disease of chronic inflammation, and it is known that transgenic mice born without TBX21 spontaneously develop abnormal lung function consistent with asthma. It is thought that TBX21, therefore, may play a role in the development of asthma in humans as well.[10]

Experimental autoimmune encephalomyelitis

[edit]

Initially it was thought thatexperimental autoimmune encephalomyelitis (EAE) is caused by autoreactiveTh1 cells. T-bet-deficient mice were resistant to EAE.[11] However, later research has discovered, that not only Th1 but alsoTh17 andThGM-CSF cells are the cause of immunopathology. Interestingly,IFNg, a main product of T-bet, has shown bidirectional effect in EAE. Injection of IFNg during acute stage worsens the course of the disease, presumably by strengthening Th1 response, however injection of IFNg in chronic stage has shown suppressive effect on EAE symptoms. Currently it is thought that IFNg stopsT helper cells from committing for example to the Th17 phenotype, stimulatesindoleamine 2,3-dioxygenase transcription (kynurenines orkyn pathway) in certaindendritic cells, stimulatescytotoxic T cells, downregulates T cell trafficking and limits their survival. T-bet and its controlled genes remain a possible target in treatment of neurological autoimmune diseases.[12]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000073861Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000001444Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: TBX21 T-box 21".
  6. ^abcdeLazarevic V, Glimcher LH, Lord GM (November 2013)."T-bet: a bridge between innate and adaptive immunity".Nature Reviews. Immunology.13 (11):777–789.doi:10.1038/nri3536.PMC 6290922.PMID 24113868.
  7. ^abHaybar H, Rezaeeyan H, Shahjahani M, Shirzad R, Saki N (June 2019). "T-bet transcription factor in cardiovascular disease: Attenuation or inflammation factor?".Journal of Cellular Physiology.234 (6):7915–7922.doi:10.1002/jcp.27935.PMID 30536907.S2CID 54473768.
  8. ^Knox JJ, Myles A, Cancro MP (March 2019)."T-bet+ memory B cells: Generation, function, and fate".Immunological Reviews.288 (1):149–160.doi:10.1111/imr.12736.PMC 6626622.PMID 30874358.
  9. ^Mohamed R, Lord GM (April 2016)."T-bet as a key regulator of mucosal immunity".Immunology.147 (4):367–376.doi:10.1111/imm.12575.PMC 4799884.PMID 26726991.
  10. ^Tantisira KG, Hwang ES, Raby BA, Silverman ES, Lake SL, Richter BG, et al. (December 2004)."TBX21: a functional variant predicts improvement in asthma with the use of inhaled corticosteroids".Proceedings of the National Academy of Sciences of the United States of America.101 (52):18099–18104.Bibcode:2004PNAS..10118099T.doi:10.1073/pnas.0408532102.PMC 539815.PMID 15604153.
  11. ^Korn T, Bettelli E, Oukka M, Kuchroo VK (2009). "IL-17 and Th17 Cells".Annual Review of Immunology.27:485–517.doi:10.1146/annurev.immunol.021908.132710.PMID 19132915.
  12. ^Benallegue N, Kebir H, Alvarez JI (October 2022)."Neuroinflammation: Extinguishing a blaze of T cells".Immunological Reviews.311 (1):151–176.doi:10.1111/imr.13122.PMC 9489683.PMID 35909230.

Further reading

[edit]

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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