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TBX1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
TBX1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4A04

Identifiers
AliasesTBX1, CAFS, CATCH22, CTHM, DGCR, DGS, DORV, TBX1C, TGA, VCF, VCFS, T-box 1, T-box transcription factor 1
External IDsOMIM:602054;MGI:98493;HomoloGene:7966;GeneCards:TBX1;OMA:TBX1 - orthologs
Gene location (Human)
Chromosome 22 (human)
Chr.Chromosome 22 (human)[1]
Chromosome 22 (human)
Genomic location for TBX1
Genomic location for TBX1
Band22q11.21Start19,756,703bp[1]
End19,783,593bp[1]
Gene location (Mouse)
Chromosome 16 (mouse)
Chr.Chromosome 16 (mouse)[2]
Chromosome 16 (mouse)
Genomic location for TBX1
Genomic location for TBX1
Band16 A3|16Start18,399,729bp[2]
End18,409,421bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • muscle of thigh

  • gastrocnemius muscle

  • biceps brachii

  • tendon of biceps brachii

  • Skeletal muscle tissue of biceps brachii

  • sperm

  • olfactory zone of nasal mucosa

  • vastus lateralis muscle

  • right lobe of thyroid gland

  • paraflocculus of cerebellum
Top expressed in
  • digastric muscle

  • lip

  • vestibular membrane of cochlear duct

  • external carotid artery

  • internal carotid artery

  • muscle of thigh

  • tibialis anterior muscle

  • temporal muscle

  • esophagus

  • vestibular sensory epithelium
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6899

21380

Ensembl

ENSG00000184058

ENSMUSG00000009097

UniProt

O43435

P70323

RefSeq (mRNA)

NM_005992
NM_080646
NM_080647
NM_001379200

NM_001285472
NM_001285476
NM_011532
NM_001373938

RefSeq (protein)

NP_005983
NP_542377
NP_542378
NP_001366129

NP_001272401
NP_001272405
NP_035662

Location (UCSC)Chr 22: 19.76 – 19.78 MbChr 16: 18.4 – 18.41 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

T-box transcription factor TBX1 also known asT-box protein 1 andtestis-specific T-box protein is aprotein that in humans is encoded by theTBX1gene.[5] Genes in theT-box family are transcription factors that play important roles in the formation of tissues and organs during embryonic development.[6] To carry out these roles, proteins made by this gene family bind to specific areas ofDNA called T-box binding element (TBE)[6] to control the expression of target genes.

Gene

[edit]

The TBX1 gene is located on the long (q) arm ofchromosome 22 at position 11.21, frombase pair 18,118,779 to base pair 18,145,669.[5]

Function

[edit]

The T-box 1 protein appears to be necessary for the normal development of large arteries that carry blood out of theheart,muscles andbones of the face and neck, and glands such as thethymus andparathyroid.[7][8] Although the T-box 1 protein acts as a transcription factor, it is not yet known which genes are regulated by the protein.

TBX1 is thought to operate on the same developmental pathway asCHD7 which can be mutated inCHARGE syndrome.[9]

Clinical significance

[edit]

Most cases of22q11.2 deletion syndrome are caused by the deletion of a small piece ofchromosome 22. This region of the chromosome contains about 30genes, including theTBX1 gene. In a small number of affected individuals without a chromosome 22 deletion,mutations in theTBX1 gene are thought to be responsible for the characteristic signs and symptoms of the syndrome. Of the three known mutations, two mutations change oneamino acid (a building block of proteins) in the T-box 1 protein. The third mutation deletes a single amino acid from the protein. These mutations likely disrupt the ability of the T-box 1 protein to bind to DNA and regulate the activity of other genes.[10][11][12]

Loss of theTBX1 gene, due to either a mutation in the gene or a deletion of part of chromosome 22, is responsible for many of the features of 22q11.2 deletion syndrome. Specifically, a loss of theTBX1 gene is associated with heart defects, an opening in the roof of the mouth (acleft palate), distinctive facial features, and low calcium levels, but does not appear to cause learning disabilities.[13][14]

Mutation inTBX1 causes predisposition tohernias.[15]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000184058Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000009097Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: T-box 1".
  6. ^abBollag RJ, Siegfried Z, Cebra-Thomas JA, Garvey N, Davison EM, Silver LM (July 1994). "An ancient family of embryonically expressed mouse genes sharing a conserved protein motif with the T locus".Nature Genetics.7 (3):383–389.doi:10.1038/ng0794-383.PMID 7920656.S2CID 32296875.
  7. ^Jerome LA, Papaioannou VE (March 2001). "DiGeorge syndrome phenotype in mice mutant for the T-box gene, Tbx1".Nature Genetics.27 (3):286–291.doi:10.1038/85845.PMID 11242110.S2CID 21030663.
  8. ^Lindsay EA, Vitelli F, Su H, Morishima M, Huynh T, Pramparo T, et al. (March 2001). "Tbx1 haploinsufficieny in the DiGeorge syndrome region causes aortic arch defects in mice".Nature.410 (6824):97–101.Bibcode:2001Natur.410...97L.doi:10.1038/35065105.PMID 11242049.S2CID 41144744.
  9. ^Zhao Y, Wang Y, Shi L, McDonald-McGinn DM, Crowley TB, McGinn DE, et al. (July 2023)."Chromatin regulators in the TBX1 network confer risk for conotruncal heart defects in 22q11.2DS".npj Genomic Medicine.8 (1) 17.doi:10.1038/s41525-023-00363-y.PMC 10354062.PMID 37463940.
  10. ^Baldini A (October 2003). "DiGeorge's syndrome: a gene at last".Lancet.362 (9393):1342–1343.doi:10.1016/S0140-6736(03)14671-5.PMID 14585631.S2CID 37195058.
  11. ^Baldini A (May 2004). "DiGeorge syndrome: an update".Current Opinion in Cardiology.19 (3):201–204.doi:10.1097/00001573-200405000-00002.PMID 15096950.S2CID 785356.
  12. ^Yagi H, Furutani Y, Hamada H, Sasaki T, Asakawa S, Minoshima S, et al. (October 2003). "Role of TBX1 in human del22q11.2 syndrome".Lancet.362 (9393):1366–1373.doi:10.1016/S0140-6736(03)14632-6.PMID 14585638.S2CID 32995817.
  13. ^Packham EA, Brook JD (April 2003)."T-box genes in human disorders".Human Molecular Genetics. 12. 12 Spec No 1 (Spec No 1):R37 –R44.doi:10.1093/hmg/ddg077.PMID 12668595.
  14. ^Yamagishi H, Srivastava D (September 2003). "Unraveling the genetic and developmental mysteries of 22q11 deletion syndrome".Trends in Molecular Medicine.9 (9):383–389.doi:10.1016/S1471-4914(03)00141-2.PMID 13129704.
  15. ^Zhang Y, Han Q, Li C, Li W, Fan H, Xing Q, Yan B (February 2014). "Genetic analysis of the TBX1 gene promoter in indirect inguinal hernia".Gene.535 (2):290–293.doi:10.1016/j.gene.2013.11.012.PMID 24295890.

Further reading

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External links

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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