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Surfactant protein C

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SFTPC
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2YAD

Identifiers
AliasesSFTPC, BRICD6, PSP-C, SFTP2, SMDP2, SP-C, surfactant protein C, SP5
External IDsOMIM:178620;MGI:109517;HomoloGene:2271;GeneCards:SFTPC;OMA:SFTPC - orthologs
Gene location (Human)
Chromosome 8 (human)
Chr.Chromosome 8 (human)[1]
Chromosome 8 (human)
Genomic location for SFTPC
Genomic location for SFTPC
Band8p21.3Start22,156,913bp[1]
End22,164,479bp[1]
Gene location (Mouse)
Chromosome 14 (mouse)
Chr.Chromosome 14 (mouse)[2]
Chromosome 14 (mouse)
Genomic location for SFTPC
Genomic location for SFTPC
Band14 D2|14 36.32 cMStart70,758,389bp[2]
End70,761,521bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • lower lobe of lung

  • right lung

  • upper lobe of lung

  • upper lobe of left lung

  • visceral pleura

  • tendon of biceps brachii

  • C1 segment

  • parotid gland

  • apex of heart

  • internal globus pallidus
Top expressed in
  • right lung lobe

  • left lung lobe

  • morula

  • pulmonary alveolus

  • human fetus

  • alveolar duct

  • sexually immature organism

  • lip

  • pulmonary alveolar epithelium

  • lung parenchyma
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6440

20389

Ensembl

ENSG00000168484

ENSMUSG00000022097

UniProt

P11686

P21841
Q6P8P8

RefSeq (mRNA)
NM_001172357
NM_001172410
NM_003018
NM_001317778
NM_001317779

NM_001317780

NM_011359

RefSeq (protein)
NP_001165828
NP_001165881
NP_001304707
NP_001304708
NP_001304709

NP_003009

NP_035489

Location (UCSC)Chr 8: 22.16 – 22.16 MbChr 14: 70.76 – 70.76 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Surfactant protein C (SP-C), is one of thepulmonary surfactant proteins. In humans this is encoded by theSFTPCgene.[5][6][7]

It is amembrane protein.

Structure

[edit]
Protein family
Surfactant protein C, N terminal propeptide
Pig SP-C, corresponds to human mature form
Identifiers
SymbolSP_C-Propep
PfamPF08999
InterProIPR001729
PROSITEPDOC00298
OPM superfamily69
OPM protein1spf
Available protein structures:
Pfam  structures /ECOD  
PDBRCSB PDB;PDBe;PDBj
PDBsumstructure summary

SFTPC is a 197-residue protein made up of two halves: a unique N-terminalpropeptide domain and a C-terminalBRICHOS domain. The around 100-aa long propeptide domain actually contains not only the cleaved part, but also the mature peptide. It can be further broken down into a 23-aa helical transmembrane propeptide proper, the mature secreted SP-C (24-58), and a linker (59-89) that connects to the BRICHOS domain.[8]

The propeptide of pulmonary surfactant C has an N-terminal alpha-helical segment whose suggested function was stabilization of the protein structure, since the mature peptide can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and formamyloid fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide.[9]

The structure of the BRICHOS domain has been solved. Mutations in this domain also lead to amyloid fibrils made up of the mature peptide, suggesting achaperone activity.[8]

Clinical significance

[edit]

Mutations are associated withsurfactant metabolism dysfunction type 2.

Humans and animals born lacking SP-C tend to develop progressiveinterstitial lung disease.

Recombinant SP-C is used in Venticute, an artificial lung surfactant.

A process to mass-produce an analogue called rSP-C33Le by fusion withspidroin has been described.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000168484Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000022097Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Keller A, Eistetter HR, Voss T, Schäfer KP (July 1991)."The pulmonary surfactant protein C (SP-C) precursor is a type II transmembrane protein".The Biochemical Journal. 277 ( Pt 2) (Pt 2):493–9.doi:10.1042/bj2770493.PMC 1151261.PMID 1859376.
  6. ^Johansson H, Nordling K, Weaver TE, Johansson J (July 2006)."The Brichos domain-containing C-terminal part of pro-surfactant protein C binds to an unfolded poly-val transmembrane segment".The Journal of Biological Chemistry.281 (30):21032–9.doi:10.1074/jbc.M603001200.PMID 16709565.
  7. ^"Entrez Gene: SFTPC surfactant, pulmonary-associated protein C".
  8. ^abWillander H, Askarieh G, Landreh M, Westermark P, Nordling K, Keränen H, et al. (February 2012)."High-resolution structure of a BRICHOS domain and its implications for anti-amyloid chaperone activity on lung surfactant protein C".Proceedings of the National Academy of Sciences of the United States of America.109 (7):2325–9.Bibcode:2012PNAS..109.2325W.doi:10.1073/pnas.1114740109.PMC 3289314.PMID 22308375.
  9. ^Li J, Liepinsh E, Almlén A, Thyberg J, Curstedt T, Jörnvall H, Johansson J (March 2006)."Structure and influence on stability and activity of the N-terminal propeptide part of lung surfactant protein C".The FEBS Journal.273 (5):926–35.doi:10.1111/j.1742-4658.2006.05124.x.PMID 16478467.S2CID 1231483.
  10. ^Kronqvist N, Sarr M, Lindqvist A, Nordling K, Otikovs M, Venturi L, et al. (May 2017)."Efficient protein production inspired by how spiders make silk".Nature Communications.8 (1): 15504.Bibcode:2017NatCo...815504K.doi:10.1038/ncomms15504.PMC 5457526.PMID 28534479.

Further reading

[edit]
PDB gallery
  • 1spf: THE NMR STRUCTURE OF THE PULMONARY SURFACTANT-ASSOCIATED POLYPEPTIDE SP-C IN AN APOLAR SOLVENT CONTAINS A VALYL-RICH ALPHA-HELIX
    1spf: THE NMR STRUCTURE OF THE PULMONARY SURFACTANT-ASSOCIATED POLYPEPTIDE SP-C IN AN APOLAR SOLVENT CONTAINS A VALYL-RICH ALPHA-HELIX

External links

[edit]
Arrestin
Membrane-spanning 4A
Myelin
Pulmonary surfactant
Tetraspanin
Other/ungrouped
This article incorporates text from the public domainPfam andInterPro:IPR015091
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