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Sp8 transcription factor

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

SP8
Identifiers
AliasesSP8, BTD, Sp8 transcription factor
External IDsOMIM:608306;MGI:2443471;HomoloGene:18548;GeneCards:SP8;OMA:SP8 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for SP8
Genomic location for SP8
Band7p21.1Start20,782,279bp[1]
End20,786,886bp[1]
Gene location (Mouse)
Chromosome 12 (mouse)
Chr.Chromosome 12 (mouse)[2]
Chromosome 12 (mouse)
Genomic location for SP8
Genomic location for SP8
Band12|12 F2Start118,810,064bp[2]
End118,816,311bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • pancreatic ductal cell

  • sural nerve

  • testicle

  • ventricular zone

  • gonad

  • olfactory zone of nasal mucosa

  • ganglionic eminence

  • nasal epithelium

  • mucosa of paranasal sinus

  • muscle of thigh
Top expressed in
  • Rostral migratory stream

  • olfactory bulb

  • lateral septal nucleus

  • primitive streak

  • prostate

  • respiratory epithelium

  • olfactory epithelium

  • lobe of prostate

  • tail of embryo

  • ventricular zone
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

221833

320145

Ensembl

ENSG00000164651

ENSMUSG00000048562

UniProt

Q8IXZ3

Q8BMJ8

RefSeq (mRNA)

NM_182700
NM_198956

NM_177082
NM_001379379
NM_001379380

RefSeq (protein)

NP_874359
NP_945194

NP_796056
NP_001366308
NP_001366309

Location (UCSC)Chr 7: 20.78 – 20.79 MbChr 12: 118.81 – 118.82 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor Sp8 also known asspecificity protein 8 (SP-8) orBtd transcription factor (buttonhead)[5] is aprotein that in humans is encoded by theSP8gene.[6][7] Sp8 is atranscription factor in theSp/KLF family.

Function

[edit]

Sp8 mediates limb outgrowth during early development.[5] Sp8 deletion in mice resulted in severeexencephaly.[8] Sp8 is a zinc-finger transcription factor. The structural difference between Sp8 and Sp9 is only one amino acid. These transcription factors are Apical Ectodermal Ridge (AER) specific in limb development. The Apical Ectodermal Ridge signaling is important for specification of distal limb structures. Sp8 and Sp9 mediate Fgf10 signaling, which in turn regulates Fgf8 expression (Fgf10→Fgf8). Fgf8 is essential for normal limb development, and without the presence of Fgf8 in early development, there would be a decreased length of the limb bud and possible failure of the limb tissue develop. Both Sp8 and Sp9 have been found in vertebrates. Although, so far only Sp8 has been proven to be present in invertebrates too. Under lab conditions, Sp8 replaced btd in Drosophila, showing that Sp8 and btd both have similar functions in limb development in both vertebrates and invertebrates. Gene knockdown in zebrafish displayed that Fgf8 expression is necessary for appendage development.[9]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000164651Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000048562Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abTreichel D, Schöck F, Jäckle H, Gruss P, Mansouri A (November 2003)."mBtd is required to maintain signaling during murine limb development"(PDF).Genes & Development.17 (21):2630–5.doi:10.1101/gad.274103.PMC 280612.PMID 14597661.
  6. ^Bell SM, Schreiner CM, Waclaw RR, Campbell K, Potter SS, Scott WJ (October 2003)."Sp8 is crucial for limb outgrowth and neuropore closure".Proceedings of the National Academy of Sciences of the United States of America.100 (21):12195–200.doi:10.1073/pnas.2134310100.PMC 218735.PMID 14526104.
  7. ^"Entrez Gene: Sp8 transcription factor".
  8. ^Waclaw RR, Allen ZJ, Bell SM, Erdélyi F, Szabó G, Potter SS, Campbell K (February 2006)."The zinc finger transcription factor Sp8 regulates the generation and diversity of olfactory bulb interneurons".Neuron.49 (4):503–16.doi:10.1016/j.neuron.2006.01.018.PMID 16476661.S2CID 17734218.
  9. ^Kawakami Y, Esteban CR, Matsui T, Rodríguez-León J, Kato S, Izpisúa Belmonte JC (October 2004). "Sp8 and Sp9, two closely related buttonhead-like transcription factors, regulate Fgf8 expression and limb outgrowth in vertebrate embryos".Development.131 (19):4763–74.doi:10.1242/dev.01331.PMID 15358670.S2CID 1959276.

Further reading

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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