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SOX13

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SOX13
Identifiers
AliasesSOX13, ICA12, Sox-13, SRY-box 13, SRY-box transcription factor 13
External IDsOMIM:604748;MGI:98361;HomoloGene:4159;GeneCards:SOX13;OMA:SOX13 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for SOX13
Genomic location for SOX13
Band1q32.1Start204,073,115bp[1]
End204,127,743bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for SOX13
Genomic location for SOX13
Band1|1 E4Start133,310,041bp[2]
End133,352,115bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sural nerve

  • right lung

  • body of uterus

  • canal of the cervix

  • popliteal artery

  • tibial arteries

  • left uterine tube

  • right uterine tube

  • upper lobe of left lung

  • ectocervix
Top expressed in
  • saccule

  • otic placode

  • otic vesicle

  • tail of embryo

  • intestinal villus

  • Ileal epithelium

  • lactiferous gland

  • ventricular zone

  • choroid plexus of fourth ventricle

  • lens
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9580

20668

Ensembl

ENSG00000143842

ENSMUSG00000070643

UniProt

Q9UN79

Q04891

RefSeq (mRNA)

NM_005686

NM_011439

RefSeq (protein)

NP_005677

NP_035569

Location (UCSC)Chr 1: 204.07 – 204.13 MbChr 1: 133.31 – 133.35 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor SOX-13 is aprotein that in humans is encoded by theSOX13gene.[5][6]

Function

[edit]

This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. It has also been determined to be a type-1 diabetes autoantigen, also known as islet cell antibody 12.[6]

In melanocytic cells SOX13 gene expression may be regulated byMITF.[7]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000143842Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000070643Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Roose J, Korver W, de Boer R, Kuipers J, Hurenkamp J, Clevers H (Apr 1999). "The Sox-13 gene: structure, promoter characterization, and chromosomal localization".Genomics.57 (2):301–5.doi:10.1006/geno.1999.5779.PMID 10198172.
  6. ^ab"Entrez Gene: SOX13 SRY (sex determining region Y)-box 13".
  7. ^Hoek KS, Schlegel NC, Eichhoff OM, Widmer DS, Praetorius C, Einarsson SO, Valgeirsdottir S, Bergsteinsdottir K, Schepsky A, Dummer R, Steingrimsson E (Dec 2008)."Novel MITF targets identified using a two-step DNA microarray strategy".Pigment Cell & Melanoma Research.21 (6):665–76.doi:10.1111/j.1755-148X.2008.00505.x.PMID 19067971.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1i11: SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN, SOX-5 HMG BOX FROM MOUSE
    1i11: SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN, SOX-5 HMG BOX FROM MOUSE
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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