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SOX12

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SOX12
Identifiers
AliasesSOX12, SOX22, SRY-box 12, SRY-box transcription factor 12
External IDsOMIM:601947;MGI:98360;HomoloGene:5057;GeneCards:SOX12;OMA:SOX12 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for SOX12
Genomic location for SOX12
Band20p13Start325,552bp[1]
End330,224bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for SOX12
Genomic location for SOX12
Band2|2 G3Start152,235,531bp[2]
End152,239,983bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ganglionic eminence

  • ventricular zone

  • stromal cell of endometrium

  • apex of heart

  • right hemisphere of cerebellum

  • right uterine tube

  • right adrenal cortex

  • sural nerve

  • right ovary

  • right frontal lobe
Top expressed in
  • aortic valve

  • Gonadal ridge

  • genital tubercle

  • somite

  • ventricular zone

  • ascending aorta

  • maxillary prominence

  • mandibular prominence

  • internal carotid artery

  • external carotid artery
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6666

20667

Ensembl

ENSG00000177732

ENSMUSG00000051817

UniProt

O15370

Q04890

RefSeq (mRNA)

NM_006943

NM_011438

RefSeq (protein)

NP_008874

NP_035568

Location (UCSC)Chr 20: 0.33 – 0.33 MbChr 2: 152.24 – 152.24 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

SOX12 is aprotein that in humans is encoded by theSOX12gene.[5][6] Sox12 belongs to theSoxC group ofSox family oftranscription factors, together withSox4 andSox11. Sox12-null knockout mice appear normal, unlike Sox4 or Sox11 knockout mice. This probably comes from functional redundancy with Sox4 and Sox11.[7] Sox12 is a weaker activator than both Sox4 and Sox11 in mouse.[8]

Members of the SOX family of transcription factors are characterized by the presence of a DNA-binding high mobility group (HMG) domain, homologous to the HMG box of sex-determining region Y (SRY). Forming a subgroup of the HMG domain superfamily, SOX proteins have been implicated in cell fate decisions in a diverse range of developmental processes. SOX transcription factors have diverse tissue-specific expression patterns during early development and have been proposed to act as target-specific transcription factors and/or as chromatin structure regulatory elements. The protein encoded by this gene was identified as a SOX family member based on conserved domains and its expression in various tissues suggests a role in both differentiation and maintenance of several cell types.[6]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000177732Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000051817Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Jay P, Sahly I, Goze C, Taviaux S, Poulat F, Couly G, Abitbol M, Berta P (Aug 1997)."SOX22 is a new member of the SOX gene family, mainly expressed in human nervous tissue".Hum Mol Genet.6 (7):1069–77.doi:10.1093/hmg/6.7.1069.PMID 9215677.
  6. ^ab"Entrez Gene: SOX12 SRY (sex determining region Y)-box 12".
  7. ^Hoser M, Potzner MR, Koch JM, Bösl MR, Wegner M, Sock E (August 2008)."Sox12 Deletion in the Mouse Reveals Nonreciprocal Redundancy with the Related Sox4 and Sox11 Transcription Factors".Mol. Cell. Biol.28 (15):4675–87.doi:10.1128/MCB.00338-08.PMC 2493363.PMID 18505825.
  8. ^Dy P, Penzo-Méndez A, Wang H, Pedraza CE, Macklin WB, Lefebvre V (May 2008)."The three SoxC proteins—Sox4, Sox11 and Sox12—exhibit overlapping expression patterns and molecular properties".Nucleic Acids Res.36 (9):3101–17.doi:10.1093/nar/gkn162.PMC 2396431.PMID 18403418.

Further reading

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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