Movatterモバイル変換


[0]ホーム

URL:


Jump to content
WikipediaThe Free Encyclopedia
Search

SOX1

From Wikipedia, the free encyclopedia
Transcription factor gene of the SOX family

SOX1
Identifiers
AliasesSOX1, SRY-box 1, SRY-box transcription factor 1
External IDsOMIM:602148;MGI:98357;HomoloGene:133765;GeneCards:SOX1;OMA:SOX1 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for SOX1
Genomic location for SOX1
Band13q34Start112,067,149bp[1]
End112,071,706bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for SOX1
Genomic location for SOX1
Band8 A1.1|8 5.73 cMStart12,445,295bp[2]
End12,450,126bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ventricular zone

  • ganglionic eminence

  • gonad

  • secondary oocyte

  • buccal mucosa cell

  • testicle

  • hypothalamus

  • amygdala

  • Brodmann area 46

  • entorhinal cortex
Top expressed in
  • medial ganglionic eminence

  • Rostral migratory stream

  • epithelium of lens

  • suprachiasmatic nucleus

  • lateral septal nucleus

  • olfactory tubercle

  • lumbar subsegment of spinal cord

  • ventricular zone

  • median eminence

  • ventromedial nucleus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6656

20664

Ensembl

ENSG00000182968

ENSMUSG00000096014

UniProt

O00570

P53783

RefSeq (mRNA)

NM_005986

NM_009233

RefSeq (protein)

NP_005977

NP_033259

Location (UCSC)Chr 13: 112.07 – 112.07 MbChr 8: 12.45 – 12.45 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

SOX1 is a gene that encodes atranscription factor with aHMG-box (high mobility group)DNA-binding domain and functions primarily inneurogenesis. SOX1,SOX2 andSOX3, members of theSOX gene family (specifically the SOXB1 group), contain transcription factors related toSRY, the testis-determining factor.

SOX1 exerts its importance in its role in development of thecentral nervous system (neurogenesis) and in particular thedevelopment of the eye, where it is functionally redundant withSOX3 and to a lesser degreeSOX2, and maintenance of neural progenitor cell identity. SOX1 expression is restricted to theneuroectoderm by proliferating progenitor cells in thetetrapod embryo.[5][6] The induction of this neuroectoderm occurs upon expression of the SOX1 gene. Inectodermal cells committed to a certain cell fate, SOX1 has shown to be one of the earliest transcription factors expressed.[7] In particular, SOX1 is first detected in the late head fold stage.[8]

Clinical significance

[edit]

Striatum development

[edit]

SOX1 is expressed particularly in theventral striatum, and Sox1-deficient mice have altered striatum development, leading e.g. toepilepsy.[5]

Lens development

[edit]

SOX1 has shown clinical significance in its direct regulation of gamma-crystallin genes, which is vital for lens development in mice. Gamma-crystallins serve as a key structural component in lens fiber cells in both mammals and amphibians. Research has shown direct deletion of the SOX1 gene in mice causes cataracts and microphthalmia. These mutant lenses fail to elongate due to the absence of gamma-crystallins.[9]

SOXB1 group redundant roles

[edit]

SOX1 is a member of the SOX gene family, in particular the SOXB1 group, which includes SOX1, SOX2, and SOX3. The SOX gene family encodes transcription factors. It is suggested the three members of the SOXB1 group have redundant roles in the development of neural stem cells. This group of SOX genes regulate neural progenitor identity. Each of these proteins have unique neural markers. Overexpression of either SOX1, SOX2, or SOX 3 increases neural progenitors and prevents neural differentiation. In non-mammalian vertebrates, loss of one SOXB1 protein results in minor phenotypic differences. This supports the claim that SOXB1 group proteins have redundant roles.[10]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000182968Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000096014Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abGuth SI, Wegner M (October 2008)."Having it both ways: Sox protein function between conservation and innovation".Cellular and Molecular Life Sciences.65 (19):3000–3018.doi:10.1007/s00018-008-8138-7.PMC 11131603.PMID 18516494.S2CID 8943181.
  6. ^Nitta KR, Takahashi S, Haramoto Y, Fukuda M, Onuma Y, Asashima M (December 2006). "Expression of Sox1 during Xenopus early embryogenesis".Biochemical and Biophysical Research Communications.351 (1):287–293.doi:10.1016/j.bbrc.2006.10.040.PMID 17056008.
  7. ^Pevny LH, Sockanathan S, Placzek M, Lovell-Badge R (1998)."A role for SOX1 in neural determination".Development.125 (10):1967–1978.doi:10.1242/dev.125.10.1967.PMID 9550729.
  8. ^Wood HB, Episkopou V (August 1999)."Comparative expression of the mouse Sox1, Sox2 and Sox3 genes from pre-gastrulation to early somite stages".Mechanisms of Development.86 (1–2):197–201.doi:10.1016/S0925-4773(99)00116-1.PMID 10446282.S2CID 5762525.
  9. ^Nishiguchi S, Wood H, Kondoh H, Lovell-Badge R, Episkopou V (March 1998)."Sox1 directly regulates the gamma-crystallin genes and is essential for lens development in mice".Genes & Development.12 (6):776–781.doi:10.1101/gad.12.6.776.PMC 316632.PMID 9512512.
  10. ^Archer TC, Jin J, Casey ES (February 2011)."Interaction of Sox1, Sox2, Sox3 and Oct4 during primary neurogenesis".Developmental Biology.350 (2):429–440.doi:10.1016/j.ydbio.2010.12.013.PMC 3033231.PMID 21147085.
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
Retrieved from "https://en.wikipedia.org/w/index.php?title=SOX1&oldid=1292677939"
Categories:
Hidden categories:

[8]ページ先頭

©2009-2025 Movatter.jp