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SLC25A46

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SLC25A46
Identifiers
AliasesSLC25A46, HMSN6B, solute carrier family 25 member 46, PCH1E
External IDsOMIM:610826;MGI:1914703;HomoloGene:14518;GeneCards:SLC25A46;OMA:SLC25A46 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for SLC25A46
Genomic location for SLC25A46
Band5q22.1Start110,738,136bp[1]
End110,765,161bp[1]
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[2]
Chromosome 18 (mouse)
Genomic location for SLC25A46
Genomic location for SLC25A46
Band18|18 B1Start31,689,164bp[2]
End31,742,964bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • secondary oocyte

  • sperm

  • lateral nuclear group of thalamus

  • right ventricle

  • Achilles tendon

  • pars compacta

  • biceps brachii

  • jejunal mucosa

  • Pons

  • pars reticulata
Top expressed in
  • supraoptic nucleus

  • Epithelium of choroid plexus

  • Region I of hippocampus proper

  • trigeminal ganglion

  • pineal gland

  • superior cervical ganglion

  • interventricular septum

  • medial dorsal nucleus

  • substantia nigra

  • extraocular muscle
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

91137

67453

Ensembl

ENSG00000164209

ENSMUSG00000024259

UniProt

Q96AG3

Q9CQS4

RefSeq (mRNA)

NM_001303249
NM_001303250
NM_138773

NM_026165
NM_001357461

RefSeq (protein)

NP_001290178
NP_001290179
NP_620128

NP_080441
NP_001344390

Location (UCSC)Chr 5: 110.74 – 110.77 MbChr 18: 31.69 – 31.74 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Solute carrier family 25 member 46 is aprotein that in humans is encoded by theSLC25A46gene. This protein is a member of theSLC25 mitochondrial solute carrierfamily. It is atransmembrane protein located in themitochondrial outer membrane involved inlipid transfer from theendoplasmic reticulum (ER) tomitochondria.[5][6]Mutations in this gene result inneuropathy and optic atrophy.[7]

Structure

[edit]

TheSLC25A46 gene is located on the q arm ofchromosome 5 in position 22.1 and spans 27,039 base pairs.[7] The gene produces a 46.2 kDa protein composed of 418amino acids.[8][9] This gene has 8exons and encodes amulti-passintegral membrane proteinlocalized to the mitochondrial outer membrane.[10][11][12]

Function

[edit]

The encoded protein is an orphan transporter involved in lipid transfer from the endoplasmic reticulum to mitochondria.[13][6] It promotesmitochondrial fission and prevents the formation of hyperfilamentous mitochondria. This protein forms acomplex with mitofilin (IMMT) on the inner mitochondrial membrane, independent ofMFN2.[5]

Clinical Significance

[edit]

Mutations in theSLC25A46 gene, inherited in anautosomal recessive manner, cause type 6Bhereditary motor and sensory neuropathy. Symptoms include early-onset optic atrophy, progressive visual loss, andperipheral sensorimotor neuropathy manifesting asaxonalCharcot-Marie-Tooth disease, with variable age at onset and severity.[11][12]

Overexpression of this protein causes mitochondrial fragmentation whileknockdown of this protein causesmitochondrial hyperfusion and hyperfilamentous mitochondria due to decreased mitochondrial fission.[5] Loss of this gene also has many other effects: prematurecellular senescence, impairedcellular respiration, destabilization of the MICOS (mitochondrial contact site and cristae organizing system) complex, loss of and shortenedcristae, altered ERmorphology, impairedcell migration, and changes in mitochondrialphospholipid composition.[6]

Interactions

[edit]

This proteininteracts withIMMT, a component of the MICOS complex, along with other components of this complex and components of an ER membrane protein complex involved in transferring lipids to mitochondria.[11][12][6] Additionally, this protein interacts withSLC7A8,SLC10A1,SLC10A6,FHL3,FUNDC1,linc01142,LEPROTL1,ODF4,VMA21,MFSD14B,PQLC1,HSD17B11,REEP2,REEP4, andTOMM22.[14] This protein possibly interacts withOPA1 andMFN2.[6]

References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000164209Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000024259Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abcAbrams AJ, Hufnagel RB, Rebelo A, Zanna C, Patel N, Gonzalez MA, et al. (August 2015)."Mutations in SLC25A46, encoding a UGO1-like protein, cause an optic atrophy spectrum disorder".Nature Genetics.47 (8):926–32.doi:10.1038/ng.3354.PMC 4520737.PMID 26168012.
  6. ^abcdeJaner A, Prudent J, Paupe V, Fahiminiya S, Majewski J, Sgarioto N, Des Rosiers C, Forest A, Lin ZY, Gingras AC, Mitchell G, McBride HM, Shoubridge EA (September 2016)."SLC25A46 is required for mitochondrial lipid homeostasis and cristae maintenance and is responsible for Leigh syndrome".EMBO Molecular Medicine.8 (9):1019–38.doi:10.15252/emmm.201506159.PMC 5009808.PMID 27390132.
  7. ^ab"Entrez Gene: Solute carrier family 25 member 46". Retrieved2018-08-17.Public Domain This article incorporates text from this source, which is in thepublic domain.
  8. ^Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, et al. (October 2013)."Integration of cardiac proteome biology and medicine by a specialized knowledgebase".Circulation Research.113 (9):1043–53.doi:10.1161/CIRCRESAHA.113.301151.PMC 4076475.PMID 23965338.
  9. ^"SLC25A46 - Solute carrier family 25 member 46".Cardiac Organellar Protein Atlas Knowledgebase (COPaKB).[permanent dead link]
  10. ^Online Mendelian Inheritance in Man (OMIM):solute carrier family 25, member 46; SLC25A46 - 610826
  11. ^abc"SLC25A46 - Solute carrier family 25 member 46 - Homo sapiens (Human) - SLC25A46 gene & protein".www.uniprot.org. Retrieved2018-08-16. This article incorporates text available under theCC BY 4.0 license.
  12. ^abc"UniProt: the universal protein knowledgebase".Nucleic Acids Research.45 (D1):D158 –D169. January 2017.doi:10.1093/nar/gkw1099.PMC 5210571.PMID 27899622.
  13. ^Palmieri F (April 2013). "The mitochondrial transporter family SLC25: identification, properties and physiopathology".Molecular Aspects of Medicine.34 (2–3):465–84.doi:10.1016/j.mam.2012.05.005.PMID 23266187.
  14. ^"SLC25A46 binary interactions found for search term SLC25A46".IntAct Molecular Interaction Database. EMBL-EBI. Retrieved2018-08-18.

Further reading

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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