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SIX3

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
SIX3
Identifiers
AliasesSIX3, HPE2, SIX homeobox 3
External IDsOMIM:603714;MGI:102764;HomoloGene:3947;GeneCards:SIX3;OMA:SIX3 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for SIX3
Genomic location for SIX3
Band2p21Start44,941,702bp[1]
End44,946,071bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for SIX3
Genomic location for SIX3
Band17 E4|17 55.42 cMStart85,921,036bp[2]
End85,936,730bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • retinal pigment epithelium

  • nasal epithelium

  • nucleus accumbens

  • mucosa of paranasal sinus

  • optic nerve

  • caudate nucleus

  • putamen

  • olfactory zone of nasal mucosa

  • anterior pituitary

  • buccal mucosa cell
Top expressed in
  • optic vesicle

  • epithelium of lens

  • pretectal area

  • subthalamus

  • neural layer of retina

  • zona incerta

  • suprachiasmatic nucleus

  • optic recess

  • thalamic reticular nucleus

  • optic stalk
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6496

20473

Ensembl

ENSG00000138083

ENSMUSG00000038805

UniProt

O95343

Q62233

RefSeq (mRNA)

NM_005413

NM_011381

RefSeq (protein)

NP_005404

NP_035511

Location (UCSC)Chr 2: 44.94 – 44.95 MbChr 17: 85.92 – 85.94 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein SIX3 is aprotein that in humans is encoded by theSIX3gene.[5][6][7]

Function

[edit]

The SIX homeobox 3 (SIX3) gene is crucial inembryonic development by providing necessary instructions for the formation of theforebrain andeye development. SIX3 is atranscription factor that binds to specificDNA sequences, controlling whether the gene is active or inactive. Activity of the SIX3 gene repressesWnt1 gene activity which ensures development of the forebrain and establishes the proper anterior posterior identity in themammalian brain. By blocking Wnt1 activity, SIX3 is able to prevent abnormal expansion of the posterior portion of the brain into the anterior brain area.

During retinal development, SIX3 has been proven to hold a key responsibility in the activation ofPax6, the master regulator ofeye development. Furthermore, SIX3 assumes its activity in the PLE (presumptive lensectoderm), the region in which thelens is expected to develop. If its presence is removed from this region, the lens fails to thicken and construct itself to its proper morphological state. Also, SIX3 plays a strategic role in the activation ofSOX2.

SIX3 has also been proven to play a role in repression of selected members of the Wnt family. In retinal development, SIX3 is responsible for the repression ofWnt8b. Also, in forebrain development, SIX3 is responsible for the repression of Wnt1 and activation of SHH,Sonic Hedgehog gene.

Clinical significance

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Mutations in SIX3 are the cause of a severe brain malformation, calledholoprosencephaly type 2 (HPE2). In HPE2, the brain fails to separate into twohemispheres during early embryonic development, leading to eye and brain malformations, which result in serious facial abnormalities.[6]

A mutantzebrafishknockout model has been developed, in which the anterior part of the head was missing due to the atypical increase ofWnt1 activity. When injected with SIX3, these zebrafish embryos were able to successfully develop a normal forebrain.[8][9] When SIX3 was turned off in mice, it resulted in a lack of retina formation due to excessive expression ofWnt8b in the region where the forebrain normally develops.[10] Both of these studies demonstrate the importance of SIX3 activity in brain and eye development.

Interactions

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SIX3 has been shown tointeract withTLE1[11] andNeuron-derived orphan receptor 1.[12][13]

References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000138083Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038805Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Granadino B, Gallardo ME, López-Ríos J, Sanz R, Ramos C, Ayuso C, Bovolenta P, Rodríguez de Córdoba S (Jan 1999). "Genomic cloning, structure, expression pattern, and chromosomal location of the human SIX3 gene".Genomics.55 (1):100–5.doi:10.1006/geno.1998.5611.PMID 9889003.
  6. ^abWallis DE, Roessler E, Hehr U, Nanni L, Wiltshire T, Richieri-Costa A, Gillessen-Kaesbach G, Zackai EH, Rommens J, Muenke M (Jun 1999). "Mutations in the homeodomain of the human SIX3 gene cause holoprosencephaly".Nature Genetics.22 (2):196–8.doi:10.1038/9718.PMID 10369266.S2CID 8319986.
  7. ^"Entrez Gene: SIX3 sine oculis homeobox homolog 3 (Drosophila)".
  8. ^Lagutin OV, Zhu CC, Kobayashi D, Topczewski J, Shimamura K, Puelles L, Russell HR, McKinnon PJ, Solnica-Krezel L, Oliver G (Feb 2003)."Six3 repression of Wnt signaling in the anterior neuroectoderm is essential for vertebrate forebrain development".Genes & Development.17 (3):368–79.doi:10.1101/gad.1059403.PMC 195989.PMID 12569128.
  9. ^Lavado A, Lagutin OV, Oliver G (Feb 2008). "Six3 inactivation causes progressive caudalization and aberrant patterning of the mammalian diencephalon".Development.135 (3):441–50.doi:10.1242/dev.010082.PMID 18094027.S2CID 1838148.
  10. ^Liu W, Lagutin O, Swindell E, Jamrich M, Oliver G (Oct 2010)."Neuroretina specification in mouse embryos requires Six3-mediated suppression of Wnt8b in the anterior neural plate".The Journal of Clinical Investigation.120 (10):3568–77.doi:10.1172/JCI43219.PMC 2947236.PMID 20890044.
  11. ^López-Ríos J, Tessmar K, Loosli F, Wittbrodt J, Bovolenta P (Jan 2003)."Six3 and Six6 activity is modulated by members of the groucho family".Development.130 (1):185–95.doi:10.1242/dev.00185.PMID 12441302.
  12. ^Laflamme C, Filion C, Bridge JA, Ladanyi M, Goldring MB, Labelle Y (Jan 2003). "The homeotic protein Six3 is a coactivator of the nuclear receptor NOR-1 and a corepressor of the fusion protein EWS/NOR-1 in human extraskeletal myxoid chondrosarcomas".Cancer Research.63 (2):449–54.PMID 12543801.
  13. ^Ohkura N, Ohkubo T, Maruyama K, Tsukada T, Yamaguchi K (2001). "The orphan nuclear receptor NOR-1 interacts with the homeobox containing protein Six3".Developmental Neuroscience.23 (1):17–24.doi:10.1159/000048692.PMID 11173923.S2CID 84167063.

Further reading

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External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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