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SHOX2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SHOX2
Identifiers
AliasesSHOX2, OG12, OG12X, SHOT, short stature homeobox 2
External IDsOMIM:602504;MGI:1201673;HomoloGene:68535;GeneCards:SHOX2;OMA:SHOX2 - orthologs
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for SHOX2
Genomic location for SHOX2
Band3q25.32Start158,095,905bp[1]
End158,106,420bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for SHOX2
Genomic location for SHOX2
Band3 E1|3 30.76 cMStart66,879,060bp[2]
End66,889,104bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • buccal mucosa cell

  • lateral nuclear group of thalamus

  • saphenous vein

  • tendon of biceps brachii

  • sperm

  • popliteal artery

  • tibial arteries

  • Achilles tendon

  • spinal ganglia

  • tibial nerve
Top expressed in
  • medial dorsal nucleus

  • lateral geniculate nucleus

  • medial geniculate nucleus

  • inferior colliculi

  • lumbar spinal ganglion

  • electrical conduction system of the heart

  • body of femur

  • superior colliculus

  • dermis

  • facial motor nucleus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6474

20429

Ensembl

ENSG00000168779

ENSMUSG00000027833

UniProt

O60902

P70390

RefSeq (mRNA)

NM_001163678
NM_003030
NM_006884

NM_013665
NM_001302357
NM_001302358
NM_001302359

RefSeq (protein)

NP_001157150
NP_003021
NP_006875

NP_001289286
NP_001289287
NP_001289288
NP_038693

Location (UCSC)Chr 3: 158.1 – 158.11 MbChr 3: 66.88 – 66.89 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Short-stature homeobox 2, also known ashomeobox protein Og12X orpaired-related homeobox protein SHOT, is aprotein that in humans is encoded by theSHOX2gene.[5][6][7]

Function

[edit]

SHOX2 is a member of thehomeobox family of genes that encode proteins containing a 60-amino acid residue motif that represents aDNA-binding domain. Homeobox proteins have been characterized extensively as transcriptional regulators involved inpattern formation in both invertebrate and vertebrate species.[5]

Clinical significance

[edit]

Several human genetic disorders are caused by aberrations in human homeobox genes. This locus represents a pseudoautosomal homeobox gene that is thought to be responsible for idiopathic short stature, and it is implicated in the short stature phenotype ofTurner syndrome patients. This gene is considered to be a candidate gene forCornelia de Lange syndrome.[5]

SHOX2 localises on chromosome 3, so it is an autosomal and not a pseudoautosomal homeobox (SHOX, which localises on the PAR1 region of chromosome X and Y, has a pseudoautosomal hereditability).

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000168779Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000027833Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abc"Entrez Gene: short stature homeobox 2".
  6. ^Blaschke RJ; Monaghan AP; Schiller S; Schechinger B; Rao E; Padilla-Nash H; Ried T; Rappold GA (March 1998)."SHOT, a SHOX-related homeobox gene, is implicated in craniofacial, brain, heart, and limb development".Proc. Natl. Acad. Sci. U.S.A.95 (5):2406–11.Bibcode:1998PNAS...95.2406B.doi:10.1073/pnas.95.5.2406.PMC 19357.PMID 9482898.
  7. ^Semina EV; Reiter RS; Murray JC (March 1998)."A new human homeobox gene OGI2X is a member of the most conserved homeobox gene family and is expressed during heart development in mouse".Hum. Mol. Genet.7 (3):415–22.doi:10.1093/hmg/7.3.415.PMID 9466998.

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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