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SEPP1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

SELENOP
Identifiers
AliasesSELENOP, SELP, SeP, SEPP, SEPP1, selenoprotein P, plasma, 1, selenoprotein P
External IDsOMIM:601484;MGI:894288;HomoloGene:3945;GeneCards:SELENOP;OMA:SELENOP - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for SELENOP
Genomic location for SELENOP
Band5p12Start42,799,880bp[1]
End42,887,392bp[1]
Gene location (Mouse)
Chromosome 15 (mouse)
Chr.Chromosome 15 (mouse)[2]
Chromosome 15 (mouse)
Genomic location for SELENOP
Genomic location for SELENOP
Band15 A1|15 1.84 cMStart3,298,029bp[2]
End3,309,990bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • jejunal mucosa

  • germinal epithelium

  • superficial temporal artery

  • parietal pleura

  • caput epididymis

  • inferior ganglion of vagus nerve

  • visceral pleura

  • corpus epididymis

  • pars reticulata

  • lactiferous duct
Top expressed in
  • stroma of bone marrow

  • intestinal villus

  • sciatic nerve

  • iris

  • jejunum

  • left lobe of liver

  • mesenteric lymph nodes

  • right kidney

  • ileum

  • calvaria
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6414

20363

Ensembl

ENSG00000250722

ENSMUSG00000064373

UniProt

P49908

P70274

RefSeq (mRNA)

NM_005410
NM_001085486
NM_001093726

NM_001042613
NM_001042614
NM_009155

RefSeq (protein)

NP_001078955
NP_001087195
NP_005401

NP_001036078
NP_001036079
NP_033181

Location (UCSC)Chr 5: 42.8 – 42.89 MbChr 15: 3.3 – 3.31 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Selenoprotein P is aprotein that in humans is encoded by theSEPP1gene.[5][6]

This gene encodes aselenoprotein containing multipleselenocysteine (Sec) residues, which are encoded by the UGAcodon that normally signals translation termination. The 3' UTR of selenoprotein genes have a common stem-loop structure, the sec insertion sequence (SECIS), which is necessary for the recognition of UGA as a Sec codon rather than as astop signal. This selenoprotein is an extracellularglycoprotein, and is unusual in that it contains 10 Sec residues (human, rat, mouse)[7] perpolypeptide, one located at the C-terminal side of protein and others at the N-terminal side. It is aheparin-binding protein that appears to be associated withendothelial cells, and has been implicated to function as anantioxidant in the extracellular space. Several transcript variants, encoding either the same or different isoform, have been found for this gene.[6]

Animal models

[edit]

Mice and dogs with knock-out variants in theirSEPP1 homologues (Selenop[8] andSELENOP[9] respectively) may develop cerebellar ataxia phenotypes.[10][11] SEPP1 and neural precursor cell levels in mouse brains increase post-exercise. Mice engineered to lack SEPP1 did not increase neural precursors.[12][13]

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000250722Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000064373Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Hill KE, Lloyd RS, Burk RF (January 1993)."Conserved nucleotide sequences in the open reading frame and 3' untranslated region of selenoprotein P mRNA".Proceedings of the National Academy of Sciences of the United States of America.90 (2):537–541.Bibcode:1993PNAS...90..537H.doi:10.1073/pnas.90.2.537.PMC 45698.PMID 8421687.
  6. ^ab"Entrez Gene: SEPP1 selenoprotein P, plasma, 1".
  7. ^Burk and Hill 2009
  8. ^"Selenop selenoprotein P [Mus musculus (house mouse)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved2022-01-24.
  9. ^"SELENOP selenoprotein P [Canis lupus familiaris (dog)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved2022-01-24.
  10. ^Christen M, Högler S, Kleiter M, Leschnik M, Weber C, Thaller D, et al. (August 2021)."Deletion of the SELENOP gene leads to CNS atrophy with cerebellar ataxia in dogs".PLOS Genetics.17 (8): e1009716.doi:10.1371/journal.pgen.1009716.PMC 8360551.PMID 34339417.
  11. ^Schomburg L, Schweizer U, Holtmann B, Flohé L, Sendtner M, Köhrle J (March 2003)."Gene disruption discloses role of selenoprotein P in selenium delivery to target tissues".The Biochemical Journal.370 (Pt 2):397–402.doi:10.1042/bj20021853.PMC 1223208.PMID 12521380.
  12. ^PÉREZ ORTEGA R (February 3, 2022)."Widely available supplement may explain brain boost from exercise".www.science.org. Retrieved2022-02-07.
  13. ^Leiter O, Zhuo Z, Rust R, Wasielewska JM, Grönnert L, Kowal S, et al. (3 February 2022)."Selenium mediates exercise-induced adult neurogenesis and reverses learning deficits induced by hippocampal injury and aging".Cell Metabolism.34 (3): 408–423.e8.doi:10.1016/j.cmet.2022.01.005.hdl:10072/418192.PMID 35120590.S2CID 246556829.

Further reading

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