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Ribostamycin

From Wikipedia, the free encyclopedia
Aminoglycoside antibiotic
Pharmaceutical compound
Ribostamycin
Clinical data
Other names(2R,3S,4R,5R,6R)-5-amino-2-(aminomethyl)-6-{[(1R,2R,3S,4R,6S)-4,6-diamino-2-{[(2S,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-3-hydroxycyclohexyl]oxy}oxane-3,4-diol
AHFS/Drugs.comInternational Drug Names
ATC code
Identifiers
  • (1R,2R,3S,4R,6S)-4,6-diamino-3-hydroxy-2-(β-D-ribofuranosyloxy)cyclohexyl 2,6-diamino-2,6-dideoxy-α-D-glucopyranoside
CAS Number
PubChemCID
ChemSpider
UNII
ChEMBL
CompTox Dashboard(EPA)
ECHA InfoCard100.053.421Edit this at Wikidata
Chemical and physical data
FormulaC17H34N4O10
Molar mass454.477 g·mol−1
3D model (JSmol)
  • C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1N)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)O)N
  • InChI=1S/C17H34N4O10/c18-2-6-10(24)12(26)8(21)16(28-6)30-14-5(20)1-4(19)9(23)15(14)31-17-13(27)11(25)7(3-22)29-17/h4-17,22-27H,1-3,18-21H2/t4-,5+,6-,7-,8-,9+,10-,11-,12-,13-,14-,15-,16-,17+/m1/s1 ☒N
  • Key:NSKGQURZWSPSBC-VVPCINPTSA-N ☒N
 ☒NcheckY (what is this?)  (verify)

Ribostamycin is anaminoglycoside-aminocyclitol antibiotic isolated from a streptomycete,Streptomyces ribosidificus, originally identified in a soil sample fromTsu City of Mie Prefecture in Japan.[1] It is made up of 3 ring subunits: 2-deoxystreptamine (DOS), neosamine C, andribose.[2] Ribostamycin, along with other aminoglycosides with the DOS subunit, is an important broad-spectrum antibiotic with important use against human immunodeficiency virus[citation needed] and is considered a critically important antimicrobial by theWorld Health Organization.,[3][4] Resistance against aminoglycoside antibiotics, such as ribostamycin, is a growing concern. The resistant bacteria contain enzymes that modify the structure through phosphorylation, adenylation, and acetylation and prevent the antibiotic from being able to interact with the bacterialribosomal RNAs.[5]

Biosynthesis

[edit]

The biosynthesis of ribostamycin begins with the sugarD-glucose, which is phosphorylated at the 6 position to formglucose-6-phosphate. The enzyme rbmA contains a genetic sequence that corresponds toNAD+ binding and catalyzes the formation of 2-deoxy-scyllo-inosose. The enzyme rmbB then catalyzes the transamination of 2-deoxy-scyllo-inosose to 2-deoxy-scyllo-inosamine withL-glutamine andpyridoxal phosphate (PLP). Enzyme rbmC oxidizes the ring to 2-deoxy-3-amino-scyllo-inosose, which is then transaminated by enzyme rmbB to DOS. DOS is then glycosylated by the glycosyltransferase rmbD withuridine diphosphate N-acetylglucosamine (UDP-Glc-NAc) to form 2’-N-acetylparomamine. The deacetylase racJ removes the acetyl group and forms paromamine. Paromamine is oxidized by enzyme rbmG and then enzyme rmbH transaminates to produceneamine. Neamine is then ribosylated to form ribostamycin.[2][3]

Biosynthetic patway for ribostamycin
Biosynthetic patway for ribostamycin

References

[edit]
  1. ^Shomura T, Ezaki N, Tsuruoka T, Niwa T, Akita E (March 1970)."Studies on antibiotic SF-733, a new antibiotic. I. Taxonomy, isolation and characterization".The Journal of Antibiotics.23 (3):155–61.doi:10.7164/antibiotics.23.155.PMID 5453309.
  2. ^abSubba B, Kharel MK, Lee HC, Liou K, Kim BG, Sohng JK (August 2005)."The ribostamycin biosynthetic gene cluster in Streptomyces ribosidificus: comparison with butirosin biosynthesis".Molecules and Cells.20 (1):90–6.doi:10.1016/S1016-8478(23)13203-1.PMID 16258246.
  3. ^abKurumbang NP, Liou K, Sohng JK (February 2011). "Biosynthesis of ribostamycin derivatives by reconstitution and heterologous expression of required gene sets".Applied Biochemistry and Biotechnology.163 (3):373–82.doi:10.1007/s12010-010-9045-6.PMID 20676801.S2CID 22366703.
  4. ^WHO Advisory Group on Integrated Surveillance of Antimicrobial Resistance (AGISAR) (2011).Critically Important Antimicrobials for Human Medicine(PDF) (Report) (3rd revision ed.). World Health Organization.ISBN 978-92-4-150448-5.
  5. ^Kudo F, Eguchi T (September 2009)."Biosynthetic genes for aminoglycoside antibiotics".The Journal of Antibiotics.62 (9):471–81.doi:10.1038/ja.2009.76.PMID 19644520.S2CID 41969498.
30S
Aminoglycosides
(initiation inhibitors)
-mycin (Streptomyces)
-micin (Micromonospora)
other
Tetracycline antibiotics
(tRNA binding)
Tetracyclines
Glycylcyclines
50S
Oxazolidinone
(initiation inhibitors)
Peptidyl transferase
Amphenicols
MLS (transpeptidation/translocation)
Macrolides
Ketolides
Lincosamides
Streptogramins
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