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RFXANK

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
RFXANK
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3UXG,3V30,4QQM

Identifiers
AliasesRFXANK, ANKRA1, BLS, F14150_1, RFX-B, regulatory factor X associated ankyrin containing protein
External IDsOMIM:603200;MGI:1333865;HomoloGene:2760;GeneCards:RFXANK;OMA:RFXANK - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)[1]
Chromosome 19 (human)
Genomic location for RFXANK
Genomic location for RFXANK
Band19p13.11Start19,192,229bp[1]
End19,201,869bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for RFXANK
Genomic location for RFXANK
Band8|8 B3.3Start70,583,444bp[2]
End70,591,804bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of transverse colon

  • right uterine tube

  • right lobe of thyroid gland

  • ventricular zone

  • left lobe of thyroid gland

  • olfactory zone of nasal mucosa

  • granulocyte

  • canal of the cervix

  • apex of heart

  • right ovary
Top expressed in
  • granulocyte

  • blood

  • interventricular septum

  • cardiac muscle tissue of left ventricle

  • gastric mucosa

  • duodenum

  • lumbar subsegment of spinal cord

  • epithelium of stomach

  • ventricular zone

  • brown adipose tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8625

19727

Ensembl

ENSG00000064490

ENSMUSG00000036120

UniProt

O14593

Q9Z205

RefSeq (mRNA)
NM_001278727
NM_001278728
NM_003721
NM_134440
NM_001370233

NM_001370234
NM_001370235
NM_001370236
NM_001370237
NM_001370238

NM_001025589
NM_011266

RefSeq (protein)
NP_001265656
NP_001265657
NP_003712
NP_604389
NP_001357162

NP_001357163
NP_001357164
NP_001357165
NP_001357166
NP_001357167

NP_001020760
NP_035396

Location (UCSC)Chr 19: 19.19 – 19.2 MbChr 8: 70.58 – 70.59 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

DNA-binding protein RFXANK is aprotein that in humans is encoded by theRFXANKgene.[5][6][7]

Function

[edit]

Major histocompatibility (MHC) class II molecules are transmembrane proteins that have a central role in development and control of the immune system. The protein encoded by this gene, along with regulatory factor X-associated protein and regulatory factor-5, forms a complex that binds to the X box motif of certain MHC class II gene promoters and activates their transcription. Once bound to the promoter, this complex associates with the non-DNA-binding factor MHCclass II transactivator, which controls the cell type specificity and inducibility of MHC class II gene expression. This protein contains ankyrin repeats involved in protein-protein interactions. Mutations in this gene have been linked to bare lymphocyte syndrome type II, complementation group B. Two transcript variants encoding different isoforms have been described for this gene, with only one isoform showing activation activity.[7]

Interactions

[edit]

RFXANK has been shown tointeract withRFXAP[8][9] andCIITA.[8][10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000064490Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000036120Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Masternak K, Barras E, Zufferey M, Conrad B, Corthals G, Aebersold R, Sanchez JC, Hochstrasser DF, Mach B, Reith W (Nov 1998). "A gene encoding a novel RFX-associated transactivator is mutated in the majority of MHC class II deficiency patients".Nature Genetics.20 (3):273–7.doi:10.1038/3081.PMID 9806546.S2CID 23780606.
  6. ^Nagarajan UM, Louis-Plence P, DeSandro A, Nilsen R, Bushey A, Boss JM (Feb 1999)."RFX-B is the gene responsible for the most common cause of the bare lymphocyte syndrome, an MHC class II immunodeficiency".Immunity.10 (2):153–62.doi:10.1016/S1074-7613(00)80016-3.PMID 10072068.
  7. ^ab"Entrez Gene: RFXANK regulatory factor X-associated ankyrin-containing protein".
  8. ^abNekrep N, Geyer M, Jabrane-Ferrat N, Peterlin BM (Aug 2001)."Analysis of ankyrin repeats reveals how a single point mutation in RFXANK results in bare lymphocyte syndrome".Molecular and Cellular Biology.21 (16):5566–76.doi:10.1128/MCB.21.16.5566-5576.2001.PMC 87278.PMID 11463838.
  9. ^Nekrep N, Jabrane-Ferrat N, Peterlin BM (Jun 2000)."Mutations in the bare lymphocyte syndrome define critical steps in the assembly of the regulatory factor X complex".Molecular and Cellular Biology.20 (12):4455–61.doi:10.1128/MCB.20.12.4455-4461.2000.PMC 85813.PMID 10825209.
  10. ^Hake SB, Masternak K, Kammerbauer C, Janzen C, Reith W, Steimle V (Oct 2000)."CIITA leucine-rich repeats control nuclear localization, in vivo recruitment to the major histocompatibility complex (MHC) class II enhanceosome, and MHC class II gene transactivation".Molecular and Cellular Biology.20 (20):7716–25.doi:10.1128/MCB.20.20.7716-7725.2000.PMC 86349.PMID 11003667.

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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