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RFX5

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
RFX5
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2KW3,3V30

Identifiers
AliasesRFX5, regulatory factor X5
External IDsOMIM:601863;MGI:1858421;HomoloGene:388;GeneCards:RFX5;OMA:RFX5 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for RFX5
Genomic location for RFX5
Band1q21.3Start151,340,640bp[1]
End151,347,357bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for RFX5
Genomic location for RFX5
Band3 F2.1|3 40.74 cMStart94,861,386bp[2]
End94,868,872bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • epithelium of nasopharynx

  • lymph node

  • monocyte

  • appendix

  • granulocyte

  • right adrenal cortex

  • rectum

  • tonsil

  • spleen

  • pons
Top expressed in
  • Scarpa's ganglion

  • secondary oocyte

  • ciliary body

  • primary oocyte

  • substantia nigra

  • zygote

  • retinal pigment epithelium

  • Paneth cell

  • neural layer of retina

  • medullary collecting duct
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5993

53970

Ensembl

ENSG00000143390

ENSMUSG00000005774

UniProt

P48382

Q9JL61

RefSeq (mRNA)

NM_000449
NM_001025603

NM_017395
NM_001355705
NM_001355706
NM_001355707
NM_001025601

RefSeq (protein)
NP_000440
NP_001020774
NP_001366341
NP_001366342
NP_001366343

NP_001366344
NP_001366345
NP_001366346
NP_001366347
NP_001366348
NP_001366349

NP_059091
NP_001342634
NP_001342635
NP_001342636

Location (UCSC)Chr 1: 151.34 – 151.35 MbChr 3: 94.86 – 94.87 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

DNA-binding protein RFX5 is aprotein that in humans is encoded by theRFX5gene.[5][6]

Function

[edit]

A lack of MHC-II expression results in a severe immunodeficiency syndrome called MHC-II deficiency, or the bare lymphocyte syndrome (BLS; MIM 209920). At least 4 complementation groups have been identified in B-cell lines established from patients with BLS. The molecular defects in complementation groups B, C, and D all lead to a deficiency in RFX, a nuclear protein complex that binds to the Xbox of MHC-II promoters. The lack of RFX binding activity in complementation group C results from mutations in the RFX5 gene encoding the 75-kD subunit of RFX (Steimle et al., 1995). RFX5 is the fifth member of the growing family of DNA-binding proteins sharing a novel and highly characteristic DNA-binding domain called the RFX motif. Multiple alternatively spliced transcript variants have been found but the full-length natures of only two have been determined.[6]

Interactions

[edit]

RFX5 has been shown tointeract withCIITA.[7][8]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000143390Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000005774Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Villard J, Reith W, Barras E, Gos A, Morris MA, Antonarakis SE, Van den Elsen PJ, Mach B (January 1998). "Analysis of mutations and chromosomal localisation of the gene encoding RFX5, a novel transcription factor affected in major histocompatibility complex class II deficiency".Human Mutation.10 (6):430–5.doi:10.1002/(SICI)1098-1004(1997)10:6<430::AID-HUMU3>3.0.CO;2-H.PMID 9401005.S2CID 41660134.
  6. ^ab"Entrez Gene: RFX5 regulatory factor X, 5 (influences HLA class II expression)".
  7. ^Hake SB, Masternak K, Kammerbauer C, Janzen C, Reith W, Steimle V (Oct 2000)."CIITA leucine-rich repeats control nuclear localization, in vivo recruitment to the major histocompatibility complex (MHC) class II enhanceosome, and MHC class II gene transactivation".Molecular and Cellular Biology.20 (20):7716–25.doi:10.1128/MCB.20.20.7716-7725.2000.PMC 86349.PMID 11003667.
  8. ^Scholl T, Mahanta SK, Strominger JL (Jun 1997)."Specific complex formation between the type II bare lymphocyte syndrome-associated transactivators CIITA and RFX5".Proceedings of the National Academy of Sciences of the United States of America.94 (12):6330–4.Bibcode:1997PNAS...94.6330S.doi:10.1073/pnas.94.12.6330.PMC 21049.PMID 9177217.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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