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Pseudomon-1 RNA motif

From Wikipedia, the free encyclopedia
RNA family
Pseudomon-1 RNA
Consensus secondary structure ofPseudomon-1 RNAs
Identifiers
SymbolPseudomon-1
RfamRF01719
Other data
RNA typesRNA
DomainPseudomonas
PDB structuresPDBe

ThePseudomon-1 RNA motif is a conservedRNA identified bybioinformatics.[1] It is used by mostspecies whosegenomes have been sequenced and that are classified within thegenusPseudomonas, and is also present inAzotobacter vinelandii, a closely related species. It is presumed to function as anon-coding RNA.Pseudomon-1 RNAs consistently have a downstreamrho-independent transcription terminator.

The intergenic region containingPseudomon-1 RNAs were also detected later by an independent study based on deep sequencing and called SPA0122[2] The genes surrounding this region suggest a similarity toSpot 42 RNA,[2] but thePseudomonas RNA functions to regulate the AlgC enzyme[3] Based on this information, the new nameErsA for the RNA was adopted.[3] Negatively regulates major porinoprD expression responsible for uptake ofcarbapenem antibiotics, by base pairing withoprD5′UTR (leading to increased bacterial resistance tomeropenem).[4] ErsA positively regulates amrZ mRNA and contributes to biofilm formation and motility.[5]

References

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  1. ^Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, Moy RH, Breaker RR (March 2010)."Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes".Genome Biology.11 (3) R31.doi:10.1186/gb-2010-11-3-r31.PMC 2864571.PMID 20230605.
  2. ^abFerrara S, Brugnoli M, De Bonis A, Righetti F, Delvillani F, Dehò G, Horner D, Briani F, Bertoni G (May 2012)."Comparative profiling of Pseudomonas aeruginosa strains reveals differential expression of novel unique and conserved small RNAs".PLOS ONE.7 (5) e36553.Bibcode:2012PLoSO...736553F.doi:10.1371/journal.pone.0036553.PMC 3349714.PMID 22590564.
  3. ^abFerrara S, Carloni S, Fulco R, Falcone M, Macchi R, Bertoni G (January 2015). "Post-transcriptional regulation of the virulence-associated enzyme AlgC by the σ(22) -dependent small RNA ErsA of Pseudomonas aeruginosa".Environmental Microbiology.17 (1):199–214.Bibcode:2015EnvMi..17..199F.doi:10.1111/1462-2920.12590.PMID 25186153.
  4. ^Zhang YF, Han K, Chandler CE, Tjaden B, Ernst RK, Lory S (December 2017)."Probing the sRNA regulatory landscape of P. aeruginosa: post-transcriptional control of determinants of pathogenicity and antibiotic susceptibility".Molecular Microbiology.106 (6):919–937.doi:10.1111/mmi.13857.PMC 5738928.PMID 28976035.
  5. ^Falcone M, Ferrara S, Rossi E, Johansen HK, Molin S, Bertoni G (2018)."Pseudomonas aeruginosa Contributes to Biofilm Development and Motility through Post-transcriptional Modulation of AmrZ".Frontiers in Microbiology.9: 238.doi:10.3389/fmicb.2018.00238.PMC 5819304.PMID 29497413.

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