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Protein subunit

From Wikipedia, the free encyclopedia
Single protein molecule that assembles with other protein molecules to form a protein complex
Rendering ofHLA-A11 showing theα (A*1101 gene product) andβ (Beta-2 microglobulin) subunits. This receptor has abound peptide (in thebinding pocket) of heterologous origin that also contributes to function.

Instructural biology, aprotein subunit is apolypeptide chain or singleprotein molecule that assembles (or "coassembles") with others to form aprotein complex.[1][2][3]Large assemblies of proteins such asviruses often use a small number of types of protein subunits as building blocks.[4][5]

A subunit is often named with a Greek or Roman letter, and the numbers of this type of subunit in a protein is indicated by a subscript.[6] For example,ATP synthase has a type of subunit called α. Three of these are present in the ATP synthase molecule, leading to the designation α3. Larger groups of subunits can also be specified, like α3β3-hexamer and c-ring.[7]

Naturally occurring proteins that have a relatively small number of subunits are referred to asoligomeric.[8] For example,hemoglobin is a symmetrical arrangement of two identical α-globin subunits and two identical β-globin subunits.[3][9] Longermultimeric proteins such asmicrotubules and othercytoskeleton proteins may consist of very large numbers of subunits. For example,dynein is a multimeric protein complex involving two heavy chains (DHCs), two intermediate chains (ICs), two light-intermediate chains (LICs) and several light chains (LCs).[10]

The subunits of a protein complex may be identical,homologous or totally dissimilar and dedicated to disparate tasks.[1]In some protein assemblies, one subunit may be a "catalytic subunit" that enzymaticallycatalyzes a reaction, whereas a "regulatory subunit" will facilitate or inhibit the activity.[11] Althoughtelomerase hastelomerase reverse transcriptase as a catalytic subunit, regulation is accomplished by factors outside the protein.[12]

An enzyme composed of both regulatory and catalytic subunits when assembled is often referred to as aholoenzyme. For example,class I phosphoinositide 3-kinase is composed of a p110 catalytic subunit and a p85 regulatory subunit.[13] One subunit is made of onepolypeptide chain. A polypeptide chain has onegene coding for it – meaning that a protein must have one gene for each unique subunit.

See also

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References

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  1. ^abStoker, H. Stephen (1 January 2015).General, Organic, and Biological Chemistry (7th ed.). Boston, MA: Cengage Learning. pp. 709–710.ISBN 978-1-305-68618-2. Retrieved15 April 2022.
  2. ^Smith, Michael B. (27 April 2020).Biochemistry: An Organic Chemistry Approach. Boca Raton: CRC Press. pp. 269–270.ISBN 978-1-351-25807-4. Retrieved15 April 2022.
  3. ^abAlberts, Bruce; Johnson, Alexander; Lewis, Julian; Raff, Martin; Roberts, Keith; Walter, Peter (2002).The Shape and Structure of Proteins. New York: Garland Science. Retrieved15 April 2022.
  4. ^Kumar, A.; Evarsson, A.; Hol, W. G. J. (1999)."Multi-protein assemblies with point group symmetry". In Vijayan, M.; Yathindra, N.; Kolaskar, A. S. (eds.).Perspectives in Structural Biology: A Volume in Honour of G.N. Ramachandran. Hyderabad, India: Universities Press. pp. 449–466.ISBN 978-81-7371-254-8. Retrieved15 April 2022.
  5. ^Witwit, Haydar; de la Torre, Juan C. (2025-04-29)."Mammarenavirus Z Protein Myristoylation and Oligomerization Are Not Required for Its Dose-Dependent Inhibitory Effect on vRNP Activity".BioChem.5 (2): 10.doi:10.3390/biochem5020010.ISSN 2673-6411.PMC 12163724.
  6. ^Lesieur, Claire (18 June 2014).Oligomerization of Chemical and Biological Compounds. Croatia: Intech. pp. 240–241.ISBN 978-953-51-1617-2. Retrieved15 April 2022.
  7. ^Ahmad, Zulfiqar; Okafor, Florence; Azim, Sofiya; Laughlin, Thomas F. (2013)."ATP Synthase: A Molecular Therapeutic Drug Target for Antimicrobial and Antitumor Peptides".Current Medicinal Chemistry.20 (15):1956–1973.doi:10.2174/0929867311320150003.ISSN 0929-8673.PMC 4734648.PMID 23432591.
  8. ^Jenkins, A. D.; Kratochvíl, P.; Stepto, R. F. T.; Suter, U. W. (1996)."Glossary of basic terms in polymer science (IUPAC Recommendations 1996)".Pure and Applied Chemistry.68 (12):2287–2311.doi:10.1351/pac199668122287.Quote:Oligomer molecule: A molecule of intermediate relative molecular mass, the structure of which essentially comprises a small plurality of units derived, actually or conceptually, from molecules of lower relative molecular mass.
  9. ^Liu, Shijie (7 April 2020).Bioprocess Engineering: Kinetics, Sustainability, and Reactor Design. Elsevier. p. 358.ISBN 978-0-12-822383-3. Retrieved15 April 2022.
  10. ^Dharan, Adarsh; Campbell, Edward M. (31 July 2018)."Role of Microtubules and Microtubule-Associated Proteins in HIV-1 Infection".Journal of Virology.92 (16): e00085–18.doi:10.1128/JVI.00085-18.ISSN 0022-538X.PMC 6069196.PMID 29899089.
  11. ^Søberg, Kristoffer; Skålhegg, Bjørn Steen (12 September 2018)."The Molecular Basis for Specificity at the Level of the Protein Kinase a Catalytic Subunit".Frontiers in Endocrinology.9: 538.doi:10.3389/fendo.2018.00538.ISSN 1664-2392.PMC 6143667.PMID 30258407.
  12. ^Daniel M, Peek GW, Tollefsbol TO (2012)."Regulation of the human catalytic subunit of telomerase (hTERT)".Gene.498 (2):135–46.doi:10.1016/j.gene.2012.01.095.PMC 3312932.PMID 22381618.
  13. ^Carpenter CL, Duckworth BC, Auger KR, Cohen B, Schaffhausen BS, Cantley LC (November 1990)."Purification and characterization of phosphoinositide 3-kinase from rat liver".J. Biol. Chem.265 (32):19704–11.doi:10.1016/S0021-9258(17)45429-9.PMID 2174051.
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