There are four geographic modes of speciation in nature, based on the extent to which speciatingpopulations are isolated from one another:allopatric,peripatric,parapatric, andsympatric. Whethergenetic drift is a minor or major contributor to speciation is the subject of much ongoing discussion.[5]
Rapid sympatric speciation can take place throughpolyploidy, such as by doubling of chromosome number; the result is progeny which are immediatelyreproductively isolated from the parent population. New species can also be created throughhybridization, followed by reproductive isolation, if the hybrid is favoured by natural selection.[citation needed]
In addressing the origin of species, there are two key issues:
the evolutionary mechanisms of speciation
how the separateness and individuality of species is maintained
Since Charles Darwin's time, efforts to understand the nature of species have primarily focused on the first aspect, and it is now widely agreed that the critical factor behind the origin of new species is reproductive isolation.[6]
InOn the Origin of Species (1859), Darwin interpreted biological evolution in terms of natural selection, but was perplexed by the clustering of organisms into species.[7] Chapter 6 of Darwin's book is entitled "Difficulties of the Theory". In discussing these "difficulties" he noted
Firstly, why, if species have descended from other species by insensibly fine gradations, do we not everywhere see innumerable transitional forms? Why is not all nature in confusion instead of the species being, as we see them, well defined?
This dilemma can be described as the absence or rarity of transitional varieties in habitat space.[8]
Another dilemma,[9] related to the first one, is the absence or rarity of transitional varieties in time. Darwin pointed out that by the theory of natural selection "innumerable transitional forms must have existed", and wondered "why do we not find them embedded in countless numbers in the crust of the earth". That clearly defined species actually do exist in nature in both space and time implies that some fundamental feature of natural selection operates to generate and maintain species.[7]
Effect of sexual reproduction on species formation
It has been argued that the resolution of Darwin's first dilemma lies in the fact thatout-crossingsexual reproduction has an intrinsic cost of rarity.[10][11][12][13][14] The cost of rarity arises as follows. If, on a resource gradient, a large number of separate species evolve, each exquisitely adapted to a very narrow band on that gradient, each species will, of necessity, consist of very few members. Finding a mate under these circumstances may present difficulties when many of the individuals in the neighborhood belong to other species. Under these circumstances, if any species' population size happens, by chance, to increase (at the expense of one or other of its neighboring species, if the environment is saturated), this will immediately make it easier for its members to find sexual partners. The members of the neighboring species, whose population sizes have decreased, experience greater difficulty in finding mates, and therefore form pairs less frequently than the larger species. This has a snowball effect, with large species growing at the expense of the smaller, rarer species, eventually driving them toextinction. Eventually, only a few species remain, each distinctly different from the other.[10][11][13] Rarity not only imposes the risk of failure to find a mate, but it may also incur indirect costs, such as the resources expended or risks taken to seek out a partner at low population densities.[citation needed]
African pygmy kingfisher, showing coloration shared by all adults of that species to a high degree of fidelity.[15]
Rarity brings with it other costs. Rare and unusual features are very seldom advantageous. In most instances, they indicate a (non-silent)mutation, which is almost certain to be deleterious. It therefore behooves sexual creatures to avoid mates sporting rare or unusual features (koinophilia).[16][17] Sexual populations therefore rapidly shed rare or peripheral phenotypic features, thus canalizing the entire external appearance, as illustrated in the accompanying image of theAfrican pygmy kingfisher,Ispidina picta. This uniformity of all the adult members of a sexual species has stimulated the proliferation offield guides on birds, mammals, reptiles, insects, and many othertaxa, in which a species can be described with a single illustration (or two, in the case ofsexual dimorphism). Once a population has become as homogeneous in appearance as is typical of most species (and is illustrated in the photograph of the African pygmy kingfisher), its members will avoid mating with members of other populations that look different from themselves.[18] Thus, the avoidance of mates displaying rare and unusual phenotypic features inevitably leads to reproductive isolation, one of the hallmarks of speciation.[19][20][21][22]
In the contrasting case of organisms thatreproduce asexually, there is no cost of rarity; consequently, there are only benefits to fine-scale adaptation. Thus, asexual organisms very frequently show the continuous variation in form (often in many different directions) that Darwin expected evolution to produce, making their classification into "species" (more correctly,morphospecies) very difficult.[10][16][17][23][24][25]
All forms of natural speciation have taken place over the course ofevolution; however, debate persists as to the relative importance of each mechanism in drivingbiodiversity.[26]
One example of natural speciation is the diversity of thethree-spined stickleback, amarine fish that, after thelast glacial period, has undergone speciation into newfreshwater colonies in isolated lakes and streams. Over an estimated 10,000 generations, the sticklebacks show structural differences that are greater than those seen between differentgenera of fish including variations in fins, changes in the number or size of their bony plates, variable jaw structure, and color differences.[27]
During allopatric (from the ancient Greekallos, "other" +patrā, "fatherland") speciation, a population splits into two geographically isolated populations (for example, byhabitat fragmentation due to geographical change such asmountain formation). The isolated populations then undergo genotypic orphenotypic divergence as: (a) they become subjected to dissimilarselective pressures; (b) differentmutations arise in the two populations. When the populations come back into contact, they have evolved such that they are reproductively isolated and are no longer capable of exchanginggenes.Island genetics is the term associated with the tendency of small, isolated genetic pools to produce unusual traits. Examples includeinsular dwarfism and the radical changes among certain famous island chains, for example onKomodo. TheGalápagos Islands are particularly famous for their influence on Charles Darwin. During his five weeks there he heard thatGalápagos tortoises could be identified by island, and noticed thatfinches differed from one island to another, but it was only nine months later that he speculated that such facts could show that species were changeable. When he returned toEngland, his speculation on evolution deepened after experts informed him that these were separate species, not just varieties, and famously that other differing Galápagos birds were all species of finches. Though the finches were less important for Darwin, more recent research has shown the birds now known asDarwin's finches to be a classic case of adaptiveevolutionary radiation.[28]
In peripatric speciation, a subform of allopatric speciation, new species are formed in isolated, smaller peripheral populations that are prevented from exchanging genes with the main population. It is related to the concept of afounder effect, since small populations often undergobottlenecks. Genetic drift is often proposed to play a significant role in peripatric speciation.[29][30]
Case studies include Mayr's investigation of bird fauna;[31] the Australian birdPetroica multicolor;[32] and reproductive isolation in populations ofDrosophila subject to population bottlenecking.[citation needed]
In parapatric speciation, there is only partial separation of the zones of two diverging populations afforded by geography; individuals of each species may come in contact or cross habitats from time to time, but reduced fitness of theheterozygote leads to selection for behaviours or mechanisms that prevent theirinterbreeding. Parapatric speciation is modelled on continuous variation within a "single", connected habitat acting as a source of natural selection rather than the effects of isolation of habitats produced in peripatric and allopatric speciation.[33]
Parapatric speciation may be associated with differential landscape-dependentselection. Even if there is agene flow between two populations, strong differential selection may impede assimilation and different species may eventually develop.[34] Habitat differences may be more important in the development of reproductive isolation than the isolation time. Caucasian rock lizardsDarevskia rudis,D. valentini andD. portschinskii allhybridize with each other in theirhybrid zone; however, hybridization is stronger betweenD. portschinskii andD. rudis, which separated earlier but live in similar habitats than betweenD. valentini and two other species, which separated later but live in climatically different habitats.[35]
Ecologists refer to[clarification needed] parapatric and peripatric speciation in terms ofecological niches. A niche must be available in order for a new species to be successful.Ring species such asLarus gulls have been claimed to illustrate speciation in progress, though the situation may be more complex.[36] The grassAnthoxanthum odoratum may be starting parapatric speciation in areas of mine contamination.[37]
Sympatric speciation is the formation of two or more descendant species from a single ancestral species all occupying the same geographic location.
Often-cited examples of sympatric speciation are found in insects that become dependent on differenthost plants in the same area.[38][39]
The best known example of sympatric speciation is that of thecichlids ofEast Africa inhabiting theRift Valley lakes, particularlyLake Victoria,Lake Malawi andLake Tanganyika. There are over 800 described species, and according to estimates, there could be well over 1,600 species in the region. Their evolution is cited as an example of bothnatural andsexual selection.[40][41] A 2008 study suggests that sympatric speciation has occurred inTennessee cave salamanders.[42] Sympatric speciation driven by ecological factors may also account for the extraordinary diversity of crustaceans living in the depths of Siberia'sLake Baikal.[43]
Budding speciation has been proposed as a particular form of sympatric speciation, whereby small groups of individuals become progressively more isolated from the ancestral stock by breeding preferentially with one another. This type of speciation would be driven by the conjunction of various advantages of inbreeding such as the expression of advantageous recessive phenotypes, reducing the recombination load, and reducing the cost of sex.[44]
Rhagoletis pomonella, the hawthorn fly, appears to be in the process of sympatric speciation.
The hawthorn fly (Rhagoletis pomonella), also known as the apple maggot fly, appears to be undergoing sympatric speciation.[45] Different populations of hawthorn fly feed on different fruits. A distinct population emerged in North America in the 19th century some time afterapples, a non-native species, were introduced. This apple-feeding population normally feeds only on apples and not on the historically preferred fruit ofhawthorns. The current hawthorn feeding population does not normally feed on apples. Some evidence, such as that six out of thirteenallozyme loci are different, that hawthorn flies mature later in the season and take longer to mature than apple flies; and that there is little evidence of interbreeding (researchers have documented a 4–6% hybridization rate) suggests that sympatric speciation is occurring.[46]
Reinforcement, also called theWallace effect, is the process by which natural selection increases reproductive isolation.[19] It may occur after two populations of the same species are separated and then come back into contact. If their reproductive isolation was complete, then they will have already developed into two separate incompatible species. If their reproductive isolation is incomplete, then further mating between the populations will produce hybrids, which may or may not be fertile. If the hybrids are infertile, or fertile but less fit than their ancestors, then there will be further reproductive isolation and speciation has essentially occurred, as inhorses anddonkeys.[47]
One reasoning behind this is that if the parents of the hybrid offspring each have naturally selected traits for their own certain environments, the hybrid offspring will bear traits from both, therefore would not fit either ecological niche as well as either parent (ecological speciation). The low fitness of the hybrids would cause selection to favorassortative mating, which would control hybridization. This is sometimes called the Wallace effect after the evolutionary biologistAlfred Russel Wallace who suggested in the late 19th century that it might be an important factor in speciation.[48] Conversely, if the hybrid offspring are more fit than their ancestors, then the populations will merge back into the same species within the area they are in contact.[citation needed]
Another important theoretical mechanism is the arise of intrinsic genetic incompatibilities, addressed in theBateson-Dobzhansky-Muller model.[49] Genes from allopatric populations will have different evolutionary backgrounds and are never tested together until hybridization at secondary contact, when negative epistatic interactions will be exposed. In other words, new alleles will emerge in a population and only pass through selection if they work well together with other genes in the same population, but it may not be compatible with genes in an allopatric population, be those other newly derived alleles or retained ancestral alleles. This is only revealed through new hybridization.[49][50] Such incompatibilities cause lower fitness in hybrids regardless of the ecological environment, and are thus intrinsic, although they can originate from the adaptation to different environments.[51] The accumulation of such incompatibilities increases faster and faster with time, creating a "snowball" effect.[52] There is a large amount of evidence supporting this theory, primarily from laboratory populations such asDrosophila andMus, and some genes involved in incompatibilities have been identified.[50]
Reinforcement favoring reproductive isolation is required for both parapatric and sympatric speciation. Without reinforcement, the geographic area of contact between different forms of the same species, called their "hybrid zone", will not develop into a boundary between the different species. Hybrid zones are regions where diverged populations meet and interbreed. Hybrid offspring are common in these regions, which are usually created by diverged species coming intosecondary contact. Without reinforcement, the two species would have uncontrollableinbreeding.[citation needed] Reinforcement may be induced in artificial selection experiments as described below.
Ecological selection is "the interaction of individuals with their environment during resource acquisition".[53] Natural selection is inherently involved in the process of speciation, whereby, "under ecological speciation, populations in different environments, or populations exploiting different resources, experience contrasting natural selection pressures on the traits that directly or indirectly bring about the evolution of reproductive isolation".[54] Evidence for the role ecology plays in the process of speciation exists. Studies of stickleback populations support ecologically-linked speciation arising as a by-product,[55] alongside numerous studies of parallel speciation, where isolation evolves between independent populations of species adapting to contrasting environments than between independent populations adapting to similar environments.[56] Ecological speciation occurs with much of the evidence, "...accumulated from top-down studies of adaptation and reproductive isolation".[56]
Sexual selection can drive speciation in a clade, independently ofnatural selection.[57] However the term "speciation", in this context, tends to be used in two different, but not mutually exclusive senses. The first and most commonly used sense refers to the "birth" of new species. That is, the splitting of an existing species into two separate species, or the budding off of a new species from a parent species, both driven by a biological "fashion fad" (a preference for a feature, or features, in one or both sexes, that do not necessarily have any adaptive qualities).[57][58][59][60] In the second sense, "speciation" refers to the wide-spread tendency of sexual creatures to be grouped into clearly defined species,[61][20] rather than forming a continuum ofphenotypes both in time and space – which would be the more obvious or logical consequence of natural selection. This was indeed recognized byDarwin as problematic, and included in hisOn the Origin of Species (1859), under the heading "Difficulties with the Theory".[7] There are several suggestions as to howmate choice might play a significant role in resolvingDarwin's dilemma.[20][10][16][17][18][62] If speciation takes place in the absence of natural selection, it might be referred to asnonecological speciation.[63][64]
New species have been created byanimal husbandry, but the dates and methods of the initiation of such species are not clear. Often, the domestic counterpart can still interbreed and produce fertile offspring with its wild ancestor. This is the case with domesticcattle, which can be considered the same species as several varieties of wildox,gaur, andyak; and with domesticsheep that can interbreed with themouflon.[65][66]
The best-documented creations of new species in the laboratory were performed in the late 1980s. William R. Rice and George W. Salt bredDrosophila melanogasterfruit flies using a maze with three different choices of habitat such as light/dark and wet/dry. Each generation was placed into the maze, and the groups of flies that came out of two of the eight exits were set apart to breed with each other in their respective groups. After thirty-five generations, the two groups and their offspring were isolated reproductively because of their strong habitat preferences: they mated only within the areas they preferred, and so did not mate with flies that preferred the other areas.[67] The history of such attempts is described by Rice and Elen E. Hostert (1993).[68][69]Diane Dodd used a laboratory experiment to show how reproductive isolation can develop inDrosophila pseudoobscura fruit flies after several generations by placing them in different media, starch- and maltose-based media.[70]
Dodd's experiment has been replicated many times, including with other kinds of fruit flies and foods.[71] Such rapid evolution of reproductive isolation may sometimes be a relic of infection byWolbachia bacteria.[72]
An alternative explanation is that these observations are consistent with sexually-reproducing animals being inherently reluctant to mate with individuals whose appearance or behavior is different from the norm. The risk that such deviations are due toheritable maladaptations is high. Thus, if an animal, unable to predict natural selection's future direction, is conditioned to produce the fittest offspring possible, it will avoid mates with unusual habits or features.[73][74][16][17][18] Sexual creatures then inevitably group themselves into reproductively isolated species.[17]
Few speciation genes have been found. They usually involve the reinforcement process of late stages of speciation. In 2008, a speciation gene causing reproductive isolation was reported.[75] It causes hybrid sterility between related subspecies. The order of speciation of three groups from a common ancestor may be unclear or unknown; a collection of three such species is referred to as a "trichotomy".[citation needed]
Speciation via polyploidy: Adiploid cell undergoes failedmeiosis, producing diploidgametes, which self-fertilize to produce a tetraploidzygote. In plants, this can effectively be a new species, reproductively isolated from its parents, and able to reproduce.
Polyploidy is a mechanism that has caused many rapid speciation events insympatry because offspring of, for example, tetraploid x diploid matings often result in triploid sterile progeny.[76] However, among plants, not all polyploids are reproductively isolated from their parents, and gene flow may still occur, such as through triploid hybrid x diploid matings that produce tetraploids, or matings betweenmeiotically unreduced gametes from diploids and gametes from tetraploids (see alsohybrid speciation).[citation needed]
It has been suggested that many of the existing plant and most animal species have undergone an event of polyploidization in their evolutionary history.[77][78] Reproduction of successful polyploid species is sometimes asexual, byparthenogenesis orapomixis, as for unknown reasons many asexual organisms are polyploid. Rare instances of polyploid mammals are known, but most often result in prenatal death.[79]
Hybridization between two different species sometimes leads to a distinctphenotype. This phenotype can also be fitter than the parental lineage and as such natural selection may then favor these individuals. Eventually, if reproductive isolation is achieved, it may lead to a separate species. However, reproductive isolation between hybrids and their parents is particularly difficult to achieve and thus hybrid speciation is considered an extremely rare event. TheMariana mallard is thought to have arisen from hybrid speciation.[citation needed]
Hybridization is an important means of speciation in plants, sincepolyploidy (having more than two copies of eachchromosome) is tolerated in plants more readily than in animals.[80][81] Polyploidy is important in hybrids as it allows reproduction, with the two different sets of chromosomes each being able to pair with an identical partner during meiosis.[78] Polyploids also have more genetic diversity, which allows them to avoidinbreeding depression in small populations.[82]
Hybridization without change in chromosome number is called homoploid hybrid speciation. It is considered very rare but has been shown inHeliconiusbutterflies[83] andsunflowers. Polyploid speciation, which involves changes in chromosome number, is a more common phenomenon, especially in plant species.[citation needed]
Theodosius Dobzhansky, who studied fruit flies in the early days of genetic research in 1930s, speculated that parts of chromosomes that switch from one location to another might cause a species to split into two different species. He mapped out how it might be possible for sections of chromosomes to relocate themselves in a genome. Those mobile sections can cause sterility in inter-species hybrids, which can act as a speciation pressure. In theory, his idea was sound, but scientists long debated whether it actually happened in nature. Eventually a competing theory involving the gradual accumulation of mutations was shown to occur in nature so often that geneticists largely dismissed the moving gene hypothesis.[84] However, 2006 research shows that jumping of a gene from one chromosome to another can contribute to the birth of new species.[85] This validates the reproductive isolation mechanism, a key component of speciation.[86]
There is debate as to the rate at which speciation events occur over geologic time. While some evolutionary biologists claim that speciation events have remained relatively constant and gradual over time (known as "Phyletic gradualism" – see diagram), somepalaeontologists such asNiles Eldredge andStephen Jay Gould[87] have argued that species usually remain unchanged over long stretches of time, and that speciation occurs only over relatively brief intervals, a view known aspunctuated equilibrium. (See diagram, andDarwin's dilemma.)[citation needed]
Evolution can be extremely rapid, as shown in the creation of domesticated animals and plants in a very short geological space of time, spanning only a few tens of thousands of years.Maize (Zea mays), for instance, wascreated inMexico in only a few thousand years, starting about 7,000 to 12,000 years ago.[88] This raises the question of why the long term rate of evolution is far slower than is theoretically possible.[89][90][91][92]
Evolution is imposed on species or groups. It is not planned or striven for in someLamarckist way.[93] The mutations on which the process depends are random events, and, except for the "silent mutations" which do not affect the functionality or appearance of the carrier, are thus usually disadvantageous, and their chance of proving to be useful in the future is vanishingly small. Therefore, while a species or group might benefit from being able to adapt to a new environment by accumulating a wide range of genetic variation, this is to the detriment of theindividuals who have to carry these mutations until a small, unpredictable minority of them ultimately contributes to such an adaptation. Thus, thecapability to evolve would requiregroup selection, a concept discredited by (for example)George C. Williams,[94]John Maynard Smith[95] andRichard Dawkins[96][97][98][99] as selectively disadvantageous to the individual.
The resolution to Darwin's second dilemma might thus come about as follows:
If sexual individuals are disadvantaged by passing mutations on to their offspring, they will avoid mutant mates with strange or unusual characteristics.[74][16][17][62] Mutations that affect the external appearance of their carriers will then rarely be passed on to the next and subsequent generations. They would therefore seldom be tested by natural selection. Evolution is, therefore, effectively halted or slowed down considerably. The only mutations that can accumulate in a population, on this punctuated equilibrium view, are ones that have no noticeable effect on the outward appearance and functionality of their bearers (i.e., they are "silent" or "neutral mutations", which can be, and are, used to trace therelatedness and age of populations and species.[16][100])
This argument implies that evolution can only occur if mutant mates cannot be avoided, as a result of a severe scarcity of potential mates. This is most likely to occur insmall, isolated communities. These occur most commonly on small islands, in remote valleys, lakes, river systems, or caves,[101] or during the aftermath of amass extinction.[100] Under these circumstances, not only is the choice of mates severely restricted but population bottlenecks, founder effects, genetic drift and inbreeding cause rapid, random changes in the isolated population's genetic composition.[101] Furthermore, hybridization with a related species trapped in the same isolate might introduce additional genetic changes. If an isolated population such as thissurvives its genetic upheavals, and subsequently expands into an unoccupied niche, or into a niche in which it has an advantage over its competitors, a new species, or subspecies, will have come into being. In geological terms, this will be an abrupt event. A resumption of avoiding mutant mates will thereafter result, once again, in evolutionary stagnation.[87][90]
In apparent confirmation of this punctuated equilibrium view of evolution, thefossil record of an evolutionary progression typically consists of species that suddenly appear, and ultimately disappear, hundreds of thousands or millions of years later, without any change in external appearance.[87][100][102] Graphically, these fossil species are represented by lines parallel with the time axis, whose lengths depict how long each of them existed. The fact that the lines remain parallel with the time axis illustrates the unchanging appearance of each of the fossil species depicted on the graph. During each species' existence new species appear at random intervals, each also lasting many hundreds of thousands of years before disappearing without a change in appearance. The exact relatedness of these concurrent species is generally impossible to determine. This is illustrated in the diagram depicting thedistribution of hominin species through time since thehominins separated from the line that led to the evolution of their closest living primate relatives, the chimpanzees.[102]
^Sepkoski, David (2012)."1. Darwin's Dilemma: Paleontology, the Fossil Record, and Evolutionary Theory".Rereading the Fossil Record: The Growth of Paleobiology as an Evolutionary Discipline. University of Chicago Press. pp. 9–50.ISBN978-0-226-74858-0.One of his greatest anxieties was that the "incompleteness" of the fossil record would be used to criticize his theory: that the apparent "gaps" in fossil succession could be cited as negative evidence, at the very least, for his proposal that all organisms have descended by minute and gradual modifications from a common ancestor.
^Stower, Hannah (2013)."Resolving Darwin's Dilemma".Nature Reviews Genetics.14 (747): 747.doi:10.1038/nrg3614.S2CID45302603.The near-simultaneous appearance of most modern animal body plans in the Cambrian explosion suggests a brief interval of rapid phenotypic and genetic evolution, which Darwin believed were too fast to be explained by natural selection.
^Rice, William R.; Salt, George W. (June 1988). "Speciation Via Disruptive Selection on Habitat Preference: Experimental Evidence".The American Naturalist.131 (6):911–917.Bibcode:1988ANat..131..911R.doi:10.1086/284831.S2CID84876223.
^Dodd, Diane M. B. (September 1989). "Reproductive Isolation as a Consequence of Adaptive Divergence inDrosophila pseudoobscura".Evolution.43 (6):1308–1311.doi:10.2307/2409365.JSTOR2409365.PMID28564510.
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