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Photoreceptor cell-specific nuclear receptor

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NR2E3
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4LOG

Identifiers
AliasesNR2E3, Nr2e3, A930035N01Rik, PNR, RNR, rd7, ESCS, RP37, nuclear receptor subfamily 2 group E member 3
External IDsOMIM:604485;MGI:1346317;HomoloGene:84397;GeneCards:NR2E3;OMA:NR2E3 - orthologs
Gene location (Human)
Chromosome 15 (human)
Chr.Chromosome 15 (human)[1]
Chromosome 15 (human)
Genomic location for NR2E3
Genomic location for NR2E3
Band15q23Start71,792,638bp[1]
End71,818,259bp[1]
Gene location (Mouse)
Chromosome 9 (mouse)
Chr.Chromosome 9 (mouse)[2]
Chromosome 9 (mouse)
Genomic location for NR2E3
Genomic location for NR2E3
Band9 B|9 32.35 cMStart59,850,054bp[2]
End59,867,942bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • buccal mucosa cell

  • testicle

  • secondary oocyte

  • gonad

  • retinal pigment epithelium

  • right uterine tube

  • tendon of biceps brachii

  • prostate

  • fundus

  • Descending thoracic aorta
Top expressed in
  • neural layer of retina

  • outer nuclear layer

  • retinal pigment epithelium

  • epithelium of lens

  • zygote

  • embryo

  • epithelium of small intestine

  • secondary oocyte

  • primary oocyte

  • ileum
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10002

23958

Ensembl

ENSG00000278570

ENSMUSG00000032292

UniProt

Q9Y5X4

Q9QXZ7

RefSeq (mRNA)

NM_001281446
NM_014249
NM_016346

NM_013708

RefSeq (protein)

NP_055064
NP_057430

NP_038736

Location (UCSC)Chr 15: 71.79 – 71.82 MbChr 9: 59.85 – 59.87 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Thephotoreceptor cell-specific nuclear receptor (PNR), also known asNR2E3 (nuclear receptor subfamily 2, group E, member 3), is aprotein that in humans is encoded by theNR2E3gene.[5] PNR is a member of thenuclear receptor super family ofintracellulartranscription factors.

Function

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PNR is exclusively expressed in theretina. The main target genes of PNR arerhodopsin and severalopsins which are essential for sight.[6]

Structure and ligands

[edit]

The crystal structure of PNR's ligand-binding domain is known. It self-dimerizes into, by default, a repressor state. Computer simulations based on this model shows that a ligand could possibly fit into PNR and switch it into a transcription activator.13-cis retinoic acid is a known weak agonist that fits into such a pocket, but no physiologic ligand is known. Two synthetic compounds, 11A and 11B, appear to be agonists but do not go into the pocket and instead work asallosteric modulators.[7] A more recent screening identifies another compound called photoregulin-1 (PR1) that functions as a reverse agonist, an activity possibly useful in the management of retinitis pigmentosa.[8]

Clinical significance

[edit]

Mutations in theNR2E3 gene have been linked to several inherited retinal diseases, including enhanced S-cone syndrome (ESCS),[9] a form ofretinitis pigmentosa,[10] and Goldmann-Favre syndrome.[11]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000278570Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000032292Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Kobayashi M, Takezawa S, Hara K, Yu RT, Umesono Y, Agata K, et al. (April 1999)."Identification of a photoreceptor cell-specific nuclear receptor".Proceedings of the National Academy of Sciences of the United States of America.96 (9):4814–9.Bibcode:1999PNAS...96.4814K.doi:10.1073/pnas.96.9.4814.PMC 21774.PMID 10220376.
  6. ^Milam AH, Rose L, Cideciyan AV, Barakat MR, Tang WX, Gupta N, et al. (January 2002)."The nuclear receptor NR2E3 plays a role in human retinal photoreceptor differentiation and degeneration".Proceedings of the National Academy of Sciences of the United States of America.99 (1):473–8.doi:10.1073/pnas.022533099.PMC 117584.PMID 11773633.
  7. ^Tan MH, Zhou XE, Soon FF, Li X, Li J, Yong EL, et al. (2013)."The crystal structure of the orphan nuclear receptor NR2E3/PNR ligand binding domain reveals a dimeric auto-repressed conformation".PLOS ONE.8 (9) e74359.Bibcode:2013PLoSO...874359T.doi:10.1371/journal.pone.0074359.PMC 3771917.PMID 24069298.
  8. ^Nakamura PA, Tang S, Shimchuk AA, Ding S, Reh TA (November 2016)."Potential of Small Molecule-Mediated Reprogramming of Rod Photoreceptors to Treat Retinitis Pigmentosa".Investigative Ophthalmology & Visual Science.57 (14):6407–6415.doi:10.1167/iovs.16-20177.PMC 5134355.PMID 27893103.
  9. ^Haider NB, Jacobson SG, Cideciyan AV, Swiderski R, Streb LM, Searby C, et al. (February 2000). "Mutation of a nuclear receptor gene, NR2E3, causes enhanced S cone syndrome, a disorder of retinal cell fate".Nature Genetics.24 (2):127–31.doi:10.1038/72777.PMID 10655056.S2CID 19508439.
  10. ^Gerber S, Rozet JM, Takezawa SI, dos Santos LC, Lopes L, Gribouval O, et al. (September 2000). "The photoreceptor cell-specific nuclear receptor gene (PNR) accounts for retinitis pigmentosa in the Crypto-Jews from Portugal (Marranos), survivors from the Spanish Inquisition".Human Genetics.107 (3):276–84.doi:10.1007/s004390000350.hdl:10400.17/1708.PMID 11071390.S2CID 2774255.
  11. ^Chavala SH, Sari A, Lewis H, Pauer GJ, Simpson E, Hagstrom SA, Traboulsi EI (August 2005)."An Arg311Gln NR2E3 mutation in a family with classic Goldmann-Favre syndrome".The British Journal of Ophthalmology.89 (8):1065–6.doi:10.1136/bjo.2005.068130.PMC 1772771.PMID 16024868.

Further reading

[edit]

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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