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PHF20

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
PHF20
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3P8D,3Q1J,3QII,3SD4

Identifiers
AliasesPHF20, C20orf104, GLEA2, HCA58, NZF, TDRD20A, TZP, PHD finger protein 20
External IDsOMIM:610335;MGI:2444148;HomoloGene:9507;GeneCards:PHF20;OMA:PHF20 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for PHF20
Genomic location for PHF20
Band20q11.22-q11.23Start35,771,974bp[1]
End35,950,370bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for PHF20
Genomic location for PHF20
Band2|2 H1Start156,196,466bp[2]
End156,309,952bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • endothelial cell

  • sperm

  • epithelium of colon

  • Achilles tendon

  • Brodmann area 23

  • germinal epithelium

  • amniotic fluid

  • glutes

  • visceral pleura

  • parietal pleura
Top expressed in
  • zygote

  • ectoderm

  • otic placode

  • otic vesicle

  • saccule

  • primary oocyte

  • secondary oocyte

  • Region I of hippocampus proper

  • cerebellar vermis

  • lobe of cerebellum
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51230

228829

Ensembl

ENSG00000025293

ENSMUSG00000038116

UniProt

Q9BVI0
Q5JWZ0

Q8BLG0

RefSeq (mRNA)

NM_016436

NM_172674

RefSeq (protein)

NP_057520

NP_766262

Location (UCSC)Chr 20: 35.77 – 35.95 MbChr 2: 156.2 – 156.31 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

PHD finger protein 20 is aprotein that in humans is encoded by thePHF20gene.[5]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000025293 –Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038116 –Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: PHF20 PHD finger protein 20".

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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