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Myomegalin

From Wikipedia, the free encyclopedia
(Redirected fromPDE4DIP)
Vertebrate protein involved in the formation of microtubules

PDE4DIP
Identifiers
AliasesPDE4DIP, CMYA2, MMGL, phosphodiesterase 4D interacting protein
External IDsOMIM:608117;MGI:1891434;HomoloGene:66961;GeneCards:PDE4DIP;OMA:PDE4DIP - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for PDE4DIP
Genomic location for PDE4DIP
Band1q21.2Start148,808,181bp[1]
End149,048,286bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for PDE4DIP
Genomic location for PDE4DIP
Band3 F2.2|3 42.28 cMStart97,597,140bp[2]
End97,796,023bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • apex of heart

  • muscle of thigh

  • gastrocnemius muscle

  • right auricle of heart

  • right hemisphere of cerebellum

  • Achilles tendon

  • gastric mucosa

  • right frontal lobe

  • popliteal artery

  • tibial arteries
Top expressed in
  • muscle of thigh

  • spermatocyte

  • lip

  • spermatid

  • triceps brachii muscle

  • superior frontal gyrus

  • retinal pigment epithelium

  • pituitary gland

  • temporal muscle

  • neural layer of retina
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9659

83679

Ensembl

ENSG00000178104

ENSMUSG00000038170

UniProt

Q5VU43

Q80YT7

RefSeq (mRNA)
NM_001002810
NM_001002811
NM_001002812
NM_001195260
NM_001195261

NM_001198832
NM_001198834
NM_014644
NM_022359
NM_001350520
NM_001350521
NM_001350522
NM_001350523
NM_001377392
NM_001377393

NM_001039376
NM_001110163
NM_001289701
NM_001289702
NM_031401

NM_177145
NM_178080

RefSeq (protein)
NP_001002810
NP_001002811
NP_001002812
NP_001182189
NP_001182190

NP_001185761
NP_001185763
NP_001337449
NP_001337450
NP_001337451
NP_001337452
NP_055459
NP_071754
NP_001364321
NP_001364322

NP_001034465
NP_001276630
NP_001276631
NP_835181

Location (UCSC)Chr 1: 148.81 – 149.05 MbChr 3: 97.6 – 97.8 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Myomegalin, also known asphosphodiesterase 4D-interacting protein orcardiomyopathy-associated protein 2, is aprotein that in humans is encoded by thePDE4DIPgene.[5][6][7] It has roles in theformation ofmicrotubules from thecentrosome.[8] Its name derives from the fact that it is highly expressed in units of tubularmyofibrils known assarcomeres and is a large protein, at 2,324 amino acids.[9] It was first characterised in 2000.[9]

Structure and function

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Myomegalin is mostly composed ofalpha-helix andcoiled-coil structures and has domains shared withmicrotubule-associated proteins.[9] It has severalisoforms, at least two of which have been characterised, CM-MMG and EB-MMG.[8]

Myomegalin is necessary for the sufficientgrowth ofmicrotubules from thecentrosomes. The CM-MMG isoform binds at the centrosome withγ-tubulin in anAKAP9-dependent manner and on the near side of theGolgi apparatus, while the EB-MMG isoform binds withMAPRE1 at the Golgi apparatus and increases MAPRE1's effects on microtubule growth.[8]

Myomegalin, specifically the CM-MMG isoform, is aparalogue ofCDK5RAP2.[8][10][11] Myomegalin depletion in cells does not lead to decreases in γ-tubulin or CDK5RAP2, unlike CDK5RAP2 depletion, and does not appear to affectmitosis through variousspindle anchoring and orientation defects, unlike CDK5RAP2. This indicates that CDK5RAP2 can somewhat serve to compensate for the absence of myomegalin. However, myomegalin-depleted cells have slowermigration, since microtubules are crucial for cell motility.[8]

Orthologues of myomegalin are seen invertebrates as far back asbony fish, around 450 million years ago. Inmammals, around 200 million years ago, myomegalin gained anOlduvai domain. Olduvai domains have so far only elsewhere been found inNBPF genes inplacental mammals, many of which are adjacent to myomegalin on chromosome 1, so it is believed that these genes originated from a duplication of myomegalin.[12] Increased NPBF Olduvai domain duplications in humans have been implicated in human brain size evolution.[13]

Interactions

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Myomegalin (PDE4DIP) has been shown tointeract withPDE4D.[6]

History

[edit]

The protein was discovered in 2000 and was so named because it was highly expressed in ratheart musclesarcomeres (units of tubularmyofibrils) and is a large protein, at 2,324 amino acids.[9]

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000178104Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038170Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Seki N, Ohira M, Nagase T, Ishikawa K, Miyajima N, Nakajima D, et al. (October 1997)."Characterization of cDNA clones in size-fractionated cDNA libraries from human brain".DNA Research.4 (5):345–9.doi:10.1093/dnares/4.5.345.PMID 9455484.
  6. ^abVerde I, Pahlke G, Salanova M, Zhang G, Wang S, Coletti D, et al. (April 2001)."Myomegalin is a novel protein of the golgi/centrosome that interacts with a cyclic nucleotide phosphodiesterase".The Journal of Biological Chemistry.276 (14):11189–98.doi:10.1074/jbc.M006546200.hdl:11573/1681344.PMID 11134006.
  7. ^"Entrez Gene: PDE4DIP phosphodiesterase 4D interacting protein (myomegalin)".
  8. ^abcdeRoubin R, Acquaviva C, Chevrier V, Sedjaï F, Zyss D, Birnbaum D, Rosnet O (February 2013)."Myomegalin is necessary for the formation of centrosomal and Golgi-derived microtubules".Biology Open.2 (2):238–50.doi:10.1242/bio.20123392.PMC 3575658.PMID 23430395.
  9. ^abcdVerde I, Pahlke G, Salanova M, Zhang G, Wang S, Coletti D, et al. (April 2001)."Myomegalin is a novel protein of the golgi/centrosome that interacts with a cyclic nucleotide phosphodiesterase".The Journal of Biological Chemistry.276 (14):11189–98.doi:10.1074/jbc.M006546200.hdl:11573/1681344.PMID 11134006.
  10. ^Dumas L, Kim YH, Karimpour-Fard A, Cox M, Hopkins J, Pollack JR, Sikela JM (September 2007)."Gene copy number variation spanning 60 million years of human and primate evolution".Genome Research.17 (9):1266–77.doi:10.1101/gr.6557307.PMC 1950895.PMID 17666543.
  11. ^O'Bleness MS, Dickens CM, Dumas LJ, Kehrer-Sawatzki H, Wyckoff GJ, Sikela JM (September 2012)."Evolutionary history and genome organization of DUF1220 protein domains".G3.2 (9):977–86.doi:10.1534/g3.112.003061.PMC 3429928.PMID 22973535.
  12. ^O'Bleness MS, Dickens CM, Dumas LJ, Kehrer-Sawatzki H, Wyckoff GJ, Sikela JM (September 2012)."Evolutionary history and genome organization of DUF1220 protein domains".G3.2 (9):977–86.doi:10.1534/g3.112.003061.PMC 3429928.PMID 22973535.
  13. ^Sikela JM, van Roy F (2018)."Changing the name of the NBPF/DUF1220 domain to the Olduvai domain".F1000Research.6 (2185): 2185.doi:10.12688/f1000research.13586.1.PMC 5773923.PMID 29399325.

Further reading

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