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PAX1

From Wikipedia, the free encyclopedia
Protein-coding gene in humans
PAX1
Identifiers
AliasesPAX1, HUP48, OFC2, paired box 1
External IDsOMIM:167411;MGI:97485;HomoloGene:4514;GeneCards:PAX1;OMA:PAX1 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for PAX1
Genomic location for PAX1
Band20p11.22Start21,705,659bp[1]
End21,718,481bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for PAX1
Genomic location for PAX1
Band2 G2|2 72.63 cMStart147,203,845bp[2]
End147,235,215bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • thymus

  • testicle

  • tibia

  • oral cavity

  • buccal mucosa cell

  • tonsil

  • amniotic fluid

  • olfactory zone of nasal mucosa

  • superior surface of tongue

  • bronchial epithelial cell
Top expressed in
  • axial skeleton

  • sclerotome

  • pharyngeal pouch

  • thymus

  • thoracic vertebral column

  • middle ear

  • Eustachian tube

  • sternum

  • urethra

  • male urethra
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5075

18503

Ensembl

ENSG00000125813

ENSMUSG00000037034

UniProt

P15863

P09084

RefSeq (mRNA)

NM_006192
NM_001257096

NM_008780

RefSeq (protein)

NP_001244025
NP_006183

NP_032806

Location (UCSC)Chr 20: 21.71 – 21.72 MbChr 2: 147.2 – 147.24 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Paired box protein Pax-1 is aprotein that in humans is encoded by thePAX1gene.[5][6]

Function

[edit]

This gene is a member of the paired box (PAX) family of transcription factors which are essential duringfetal development. It is required for the development of the ventralvertebral column. Its expression is limited to thepharyngeal pouches and the cells that surround the developing vertebrae near the top where the head will be established to help give rise to the neck and the start of the formation of the shoulders andarm buds. Cancers, such as ovarian and cervical cancers, add amethyl (CH3) group which silences, or disables, the gene which may be able to suppress the tumor by regulating when other cells divide and increase. A substitution or deletion of this gene in mice can produce variants of the mutantundulated which is characterized by segmentation abnormalities along the inner spine. Mutations in the human gene may contribute to the condition ofKlippel–Feil syndrome, which is the failure of the vertebrae to segment near the top of the spine and possibly further down with symptoms including a short, immovable neck and a low hairline on the back of the head.[7][8][9][10]

Interactions

[edit]

PAX1 has been shown tointeract withMEOX1[11] andMEOX2.[11]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000125813Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000037034Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Schnittger S, Rao VV, Deutsch U, Gruss P, Balling R, Hansmann I (December 1992). "Pax1, a member of the paired box-containing class of developmental control genes, is mapped to human chromosome 20p11.2 by in situ hybridization (ISH and FISH)".Genomics.14 (3):740–4.doi:10.1016/S0888-7543(05)80177-6.PMID 1358810.
  6. ^"Entrez Gene: PAX1 paired box gene 1".
  7. ^"Genes and Mapped Phenotypes".
  8. ^Hofmann C, Drossopoulou G, McMahon A, Balling R, Tickle C (1998)."Inhibitory action of BMPs on Pax1 expression and on shoulder girdle formation during limb development".Dev. Dyn.213 (2):199–206.doi:10.1002/(SICI)1097-0177(199810)213:2<199::AID-AJA5>3.0.CO;2-B.PMID 9786420.S2CID 12943200.
  9. ^Wallin J, Wilting J, Koseki H, Fritsch R, Christ B, Balling R (1994). "The role of Pax-1 in axial skeleton development".Development.120 (5):1109–21.doi:10.1242/dev.120.5.1109.PMID 8026324.
  10. ^McGaughran JM, Oates A, Donnai D, Read AP, Tassabehji M (2003)."Mutations in PAX1 may be associated with Klippel-Feil syndrome".Eur. J. Hum. Genet.11 (6):468–74.doi:10.1038/sj.ejhg.5200987.PMID 12774041.
  11. ^abStamataki D, Kastrinaki M, Mankoo BS, Pachnis V, Karagogeos D (2001)."Homeodomain proteins Mox1 and Mox2 associate with Pax1 and Pax3 transcription factors".FEBS Lett.499 (3):274–8.Bibcode:2001FEBSL.499..274S.doi:10.1016/S0014-5793(01)02556-X.PMID 11423130.S2CID 40668112.

Further reading

[edit]

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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