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PAH world hypothesis

From Wikipedia, the free encyclopedia
Hypothesis about the origin of life

ThePAH world hypothesis is a speculativehypothesis that proposes thatpolycyclic aromatic hydrocarbons (PAHs), known to be abundant in theuniverse,[1][2][3] including in comets,[4] and assumed to be abundant in theprimordial soup of the earlyEarth, played a major role in theorigin of life by mediating the synthesis ofRNA molecules, leading into theRNA world. However, as yet, the hypothesis is untested.[5]

A PAH stack assembling

Background

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TheMiller–Urey experiment showed that organic compounds can be readily produced under the presumed conditions of the earlyEarth.

The 1952Miller–Urey experiment demonstrated the synthesis oforganic compounds, such asamino acids,formaldehyde andsugars, from the originalinorganic precursors the researchers presumed to have been present in theprimordial soup (but is no longer considered likely). This experiment inspired many others. In 1961,Joan Oró found that thenucleotide baseadenine could be made fromhydrogen cyanide (HCN) andammonia in a water solution.[6] Experiments conducted later showed that the otherRNA and DNA nucleobases could be obtained through simulated prebiotic chemistry with areducing atmosphere.[7]

TheRNA world hypothesis shows how RNA can become its owncatalyst (aribozyme). In between there are some missing steps such as how the firstRNA molecules could be formed. The PAH world hypothesis was proposed by Simon Nicholas Platts in May 2004 to try to fill in this missing step.[8] A more thoroughly elaborated idea has been published byEhrenfreundet al.[9]

Polycyclic aromatic hydrocarbons

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Main article:Polycyclic aromatic hydrocarbon
TheCat's Paw Nebula lies inside theMilky Way Galaxy and is located in theconstellationScorpius.
Green areas show regions where radiation from hot stars collided with large molecules and small dust grains called "polycyclic aromatic hydrocarbons" (PAHs), causing them tofluoresce.
(Spitzer Space Telescope, 2018)

Polycyclic aromatic hydrocarbons are the most common and abundant of the known polyatomic molecules in the visibleuniverse, and are considered a likely constituent of theprimordial sea.[1][2][3] PAHs, along withfullerenes (or "buckyballs"), have been recently detected in nebulae.[10]Buckminsterfullerene (C60) has been identified in theinterstellar medium spaces.[11][12] (Fullerenes are also implicated in the origin of life; according to astronomer Letizia Stanghellini, "It's possible that buckyballs from outer space provided seeds for life on Earth."[13]) PAHs, subjected tointerstellar medium (ISM) conditions, are transformed, throughhydrogenation,oxygenation andhydroxylation, to more complexorganics — "a step along the path towardamino acids andnucleotides, the raw materials ofproteins andDNA, respectively".[14][15] Further, as a result of these transformations, the PAHs lose theirspectroscopic signature which could be one of the reasons "for the lack of PAH detection ininterstellar icegrains, particularly the outer regions of cold, dense clouds or the upper molecular layers ofprotoplanetary disks."[14][15]

In 2013,polycyclic aromatic hydrocarbons were detected in theupper atmosphere ofTitan, the largestmoon of theplanetSaturn.[16]

Low-temperature chemical pathways from simpleorganic compounds to complex PAHs have been demonstrated. Such chemical pathways may help explain the presence of PAHs in the low-temperature atmosphere ofSaturn's moonTitan, and may be significant pathways, in terms of the PAH world hypothesis, in producing precursors to biochemicals related to life as we know it.[17][18]

PAHs are not normally very soluble in sea water, but when subject to ionizing radiation such as solarUV light, the outerhydrogen atoms can be stripped off and replaced with ahydroxyl group, rendering the PAHs far more soluble.

These modified PAHs areamphiphilic, which means that they have parts that are bothhydrophilic andhydrophobic. When in solution, they assemble indiscoticmesogenic (liquid crystal) stacks which, likelipids, tend to organize with their hydrophobic parts protected.

In 2014,NASA announced a database[19] for trackingpolycyclic aromatic hydrocarbons (PAHs) in theuniverse. More than 20% of thecarbon in the universe may be associated with PAHs,[19][20] possiblestarting materials for theformation oflife. PAHs seem to have been formed as early as a couple of billion years after theBig Bang, are abundant in the universe,[1][2][3] and are associated withnew stars andexoplanets.[19]

Reactions

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Attachment of nucleobases to PAH scaffolding

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In the self-ordering PAH stack, the separation between adjacent rings is 0.34 nm. This is the same separation found between adjacentnucleotides ofRNA andDNA. Smaller molecules will naturally attach themselves to the PAH rings. However PAH rings, while forming, tend to swivel around on one another, which will tend to dislodge attached compounds that would collide with those attached to those above and below. Therefore, it encourages preferential attachment of flat molecules such aspyrimidine andpurinenucleobases, the key constituents (and information carriers) of RNA and DNA. These bases are similarly amphiphilic and so also tend to line up in similar stacks.

Attachment of oligomeric backbone

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According to the hypothesis, once the nucleobases are attached (viahydrogen bonds) to the PAH scaffolding, the inter-base distance would select for "linker" molecules of a specific size, such as smallformaldehyde (methanal)oligomers, also taken from the prebiotic "soup", which will bind (viacovalent bonds) to the nucleobases as well as each other to add a flexible structural backbone.[5][8]

Detachment of the RNA-like strands

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A subsequent transient drop in the ambientpH (increase in acidity), for example as a result of avolcanic discharge of acidic gases such assulfur dioxide orcarbon dioxide, would allow the bases to break off from their PAH scaffolding, forming RNA-like molecules (with the formaldehyde backbone instead of the ribose-phosphate backbone used by "modern" RNA, but the same 0.34 nm pitch).[5]

Formation of ribozyme-like structures

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The hypothesis further speculates that once long RNA-like single strands are detached from the PAH stacks, and after ambient pH levels became less acidic, they would tend to fold back on themselves, withcomplementary sequences of nucleobases preferentially seeking out each other and forminghydrogen bonds, creating stable, at least partially double-stranded RNA-like structures, similar toribozymes. The formaldehyde oligomers would eventually be replaced with more stable ribose-phosphate molecules for the backbone material, resulting in a starting milestone for theRNA world hypothesis, which speculates about further evolutionary developments from that point.[5][8][21]

See also

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References

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  1. ^abcCarey, Bjorn (October 18, 2005)."Life's Building Blocks 'Abundant in Space'".Space.com. RetrievedMarch 3, 2014.
  2. ^abcHudgins, Douglas M.; Bauschlicher, Jr, Charles W.; Allamandola, L. J. (October 10, 2005). "Variations in the Peak Position of the 6.2 μm Interstellar Emission Feature: A Tracer of N in the Interstellar Polycyclic Aromatic Hydrocarbon Population".Astrophysical Journal.632 (1):316–332.Bibcode:2005ApJ...632..316H.CiteSeerX 10.1.1.218.8786.doi:10.1086/432495.S2CID 7808613.
  3. ^abcAllamandola, Louis; et al. (April 13, 2011)."Cosmic Distribution of Chemical Complexity".NASA. Archived fromthe original on February 27, 2014. RetrievedMarch 3, 2014.
  4. ^Clavin, Whitney (February 10, 2015)."Why Comets Are Like Deep Fried Ice Cream".NASA. RetrievedFebruary 10, 2015.
  5. ^abcdPlatts, Simon Nicholas,"The PAH World - Discotic polynuclear aromatic compounds as a mesophase scaffolding at the origin of life"
  6. ^Oró J, Kimball AP (August 1961). "Synthesis of purines under possible primitive earth conditions. I. Adenine from hydrogen cyanide".Archives of Biochemistry and Biophysics.94 (2):217–27.doi:10.1016/0003-9861(61)90033-9.PMID 13731263.
  7. ^Oró J (1967). Fox SW (ed.).Origins of Prebiological Systems and of Their Molecular Matrices. New York Academic Press. p. 137.
  8. ^abc"Prebiotic Molecular Selection and Organization"Archived 2009-05-24 at theWayback Machine, NASA's Astrobiology website
  9. ^Ehrenfreund, P; Rasmussen, S; Cleaves, J; Chen, L (2006). "Experimentally tracing the key steps in the origin of life: The aromatic world".Astrobiology.6 (3):490–520.Bibcode:2006AsBio...6..490E.doi:10.1089/ast.2006.6.490.PMID 16805704.
  10. ^García-Hernández, D. A.; Manchado, A.; García-Lario, P.; Stanghellini, L.; Villaver, E.; Shaw, R. A.; Szczerba, R.; Perea-Calderón, J. V. (2010-10-28). "Formation Of Fullerenes In H-Containing Planetary Nebulae".The Astrophysical Journal Letters.724 (1):L39 –L43.arXiv:1009.4357.Bibcode:2010ApJ...724L..39G.doi:10.1088/2041-8205/724/1/L39.S2CID 119121764.
  11. ^Starr, Michelle (29 April 2019)."The Hubble Space Telescope Has Just Found Solid Evidence of Interstellar Buckyballs".ScienceAlert.com. Retrieved29 April 2019.
  12. ^Cordiner, M.A.; et al. (22 April 2019)."Confirming Interstellar C60 + Using the Hubble Space Telescope".The Astrophysical Journal Letters.875 (2): L28.arXiv:1904.08821.Bibcode:2019ApJ...875L..28C.doi:10.3847/2041-8213/ab14e5.S2CID 121292704.
  13. ^Atkinson, Nancy (October 27, 2010)."Buckyballs Could Be Plentiful in the Universe".Universe Today. RetrievedOctober 28, 2010.
  14. ^ab"NASA Cooks Up Icy Organics to Mimic Life's Origins".Space.com. September 20, 2012. RetrievedSeptember 22, 2012.
  15. ^abGudipati, Murthy S.; Yang, Rui (September 1, 2012). "In-Situ Probing Of Radiation-Induced Processing Of Organics In Astrophysical Ice Analogs—Novel Laser Desorption Laser Ionization Time-Of-Flight Mass Spectroscopic Studies".The Astrophysical Journal Letters.756 (1): L24.Bibcode:2012ApJ...756L..24G.doi:10.1088/2041-8205/756/1/L24.S2CID 5541727.
  16. ^López-Puertas, Manuel (June 6, 2013)."PAH's in Titan's Upper Atmosphere".CSIC. Archived fromthe original on December 3, 2013. RetrievedJune 6, 2013.
  17. ^Staff (11 October 2018).""A Prebiotic Earth" – Missing Link Found on Saturn's Moon Titan".DailyGalaxy.com. Retrieved11 October 2018.
  18. ^Zhao, Long; et al. (8 October 2018)."Low-temperature formation of polycyclic aromatic hydrocarbons in Titan's atmosphere".Nature Astronomy.2 (12):973–979.Bibcode:2018NatAs...2..973Z.doi:10.1038/s41550-018-0585-y.S2CID 105480354.
  19. ^abcHoover, Rachel (February 21, 2014)."Need to Track Organic Nano-Particles Across the Universe? NASA's Got an App for That".NASA. Archived fromthe original on May 10, 2020. RetrievedFebruary 22, 2014.
  20. ^Hoover, Rachel (February 24, 2014)."Online Database Tracks Organic Nano-Particles Across the Universe".Sci Tech Daily. RetrievedMarch 10, 2015.
  21. ^Lincoln, Tracey A.; Joyce, Gerald F. (January 8, 2009)."Self-Sustained Replication of an RNA Enzyme".Science.323 (5918). New York: American Association for the Advancement of Science:1229–1232.Bibcode:2009Sci...323.1229L.doi:10.1126/science.1167856.PMC 2652413.PMID 19131595.

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