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Orphan receptor

From Wikipedia, the free encyclopedia
A protein with a receptor structure but with unidentified ligand
This article needs to beupdated. The reason given is: Ligands are now partially identified along with a few other new discoveries. Please help update this article to reflect recent events or newly available information.(March 2024)

Inbiochemistry, anorphan receptor is a protein that has a similar structure to other identifiedreceptors but whoseendogenousligand has not yet been identified. If a ligand for an orphan receptor is later discovered, the receptor is referred to as an "adopted orphan".[1] Conversely, the termorphan ligand refers to a biological ligand whose cognate receptor has not yet been identified.

Examples

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Examples of orphan receptors are found in theG protein-coupled receptor (GPCR)[2][3][4] andnuclear receptor[5][6][7] families.

If an endogenous ligand is found, the orphan receptor is "adopted" or "de-orphanized".[8] An example is the nuclear receptorfarnesoid X receptor (FXR) andTGR5/GPCR19/G protein-coupled bile acid receptor, both of which are activated bybile acids.[9] Adopted orphan receptors in thenuclear receptor group include FXR,liver X receptor (LXR), andperoxisome proliferator-activated receptor (PPAR). Another example of an orphan receptor site is thePCP binding site in theNMDA receptor,[10] a type ofligand-gated ion channel. This site is where the recreational drug PCP works, but no endogenous ligand is known to bind to this site.

GPCR orphan receptors are usually given the name "GPR" followed by a number, for exampleGPR21. In the GPCR family, nearly 100 receptor-like genes remain orphans.[11]

Discovery

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Historically, receptors were discovered by using ligands to "fish" for their receptors. Hence, by definition, these receptors were not orphans. However, with modern molecular biology techniques such asreverse pharmacology, screening ofcDNA libraries, andwhole genome sequencing, receptors have been identified based on sequence similarity to known receptors, without knowing what their ligands are.

References

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  1. ^Nanduri, Ravikanth; Bhutani, Isha; Somavarapu, Arun Kumar; Mahajan, Sahil; Parkesh, Raman; Gupta, Pawan (2015-01-01)."ONRLDB—manually curated database of experimentally validated ligands for orphan nuclear receptors: insights into new drug discovery".Database.2015 bav112.doi:10.1093/database/bav112.PMC 4669993.PMID 26637529.
  2. ^Levoye A, Dam J, Ayoub MA, Guillaume JL, Jockers R (2006)."Do orphan G-protein-coupled receptors have ligand-independent functions? New insights from receptor heterodimers".EMBO Rep.7 (11):1094–8.doi:10.1038/sj.embor.7400838.PMC 1679777.PMID 17077864.
  3. ^Civelli O, Saito Y, Wang Z, Nothacker HP, Reinscheid RK (2006). "Orphan GPCRs and their ligands".Pharmacol Ther.110 (3):525–32.doi:10.1016/j.pharmthera.2005.10.001.PMID 16289308.
  4. ^Wise A, Jupe SC, Rees S (2004). "The identification of ligands at orphan G-protein coupled receptors".Annu Rev Pharmacol Toxicol.44 (February):43–66.doi:10.1146/annurev.pharmtox.44.101802.121419.PMID 14744238.S2CID 2618257.
  5. ^Giguère V (October 1999)."Orphan nuclear receptors: from gene to function".Endocr. Rev.20 (5):689–725.doi:10.1210/edrv.20.5.0378.PMID 10529899.
  6. ^Benoit G, Cooney A, Giguere V,Ingraham H, Lazar M, Muscat G, Perlmann T, Renaud JP, Schwabe J, Sladek F,Tsai MJ, Laudet V (2006). "International Union of Pharmacology. LXVI. Orphan nuclear receptors".Pharmacol Rev.58 (4):798–836.doi:10.1124/pr.58.4.10.PMID 17132856.S2CID 2619263.
  7. ^Shi Y (June 2007)."Orphan Nuclear Receptors in Drug Discovery".Drug Discov. Today.12 (11–12):440–5.doi:10.1016/j.drudis.2007.04.006.PMC 2748783.PMID 17532527.
  8. ^SHI, Y (2007)."Orphan nuclear receptors in drug discovery".Drug Discovery Today.12 (11–12):440–445.doi:10.1016/j.drudis.2007.04.006.PMC 2748783.PMID 17532527.
  9. ^Mi LZ, Devarakonda S, Harp JM, Han Q, Pellicciari R, Willson TM, Khorasanizadeh S, Rastinejad F (April 2003)."Structural basis for bile acid binding and activation of the nuclear receptor FXR".Mol. Cell.11 (4):1093–100.doi:10.1016/S1097-2765(03)00112-6.PMID 12718893.
  10. ^Fagg GE (May 1987). "Phencyclidine and related drugs bind to the activated N-methyl-D-aspartate receptor-channel complex in rat brain membranes".Neurosci. Lett.76 (2):221–7.doi:10.1016/0304-3940(87)90719-1.PMID 2438606.S2CID 23177400.
  11. ^Laschet, C; Dupuis, N; Hanson, J (2018). "The G protein-coupled receptors deorphanization landscape".Biochemical Pharmacology.153:62–74.doi:10.1016/j.bcp.2018.02.016.PMID 29454621.S2CID 3566341.

External links

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  • "Class A Orphans GPCRs".IUPHAR/BPS Guide to PHARMACOLOGY Database. University of Edinburgh / International Union of Basic and Clinical Pharmacology.
  • "Adhesion Class GPCRs".IUPHAR/BPS Guide to PHARMACOLOGY Database. University of Edinburgh / International Union of Basic and Clinical Pharmacology.
  • "Class C Orphans GPCRs".IUPHAR/BPS Guide to PHARMACOLOGY Database. University of Edinburgh / International Union of Basic and Clinical Pharmacology.
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