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Nucleoside analogue

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Biochemical compound
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Theantiviral drugaciclovir (bottom), a nucleoside analogue that functions by mimickingguanosine (top)

Nucleoside analogues arestructural analogues of anucleoside, which normally contain anucleobase and a sugar.Nucleotide analogues are analogues of anucleotide, which normally has one to threephosphates linked to a nucleoside. Both types of compounds can deviate from what they mimick in a number of ways, as changes can be made to any of the constituent parts (nucleobase, sugar, phosphate).[1] They are related tonucleic acid analogues.

Nucleoside and nucleotide analogues can be used in therapeutic drugs, including a range of antiviral products used to preventviral replication in infected cells. The most commonly used isacyclovir.

Nucleotide and nucleoside analogues can also be found naturally. Examples include ddhCTP (3ʹ-deoxy-3′,4ʹdidehydro-CTP) produced by the human antiviral proteinviperin[2] andsinefungin (aS-Adenosyl methionine analogue) produced by someStreptomyces.[3]

Function

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These agents can be used againsthepatitis B virus,hepatitis C virus,herpes simplex, andHIV. Once they arephosphorylated, they work asantimetabolites by being similar enough tonucleotides to be incorporated into growingDNA strands; but they act aschain terminators and stop viralDNA polymerase. They are not specific to viral DNA and also affectmitochondrial DNA. Because of this they have side effects such as bone marrow suppression.

There is a large family ofnucleoside analogue reverse transcriptase inhibitors, because DNA production byreverse transcriptase is very different from normal humanDNA replication, so it is possible to design nucleoside analogues that are preferentially incorporated by the former. Some nucleoside analogues, however, can function both as NRTIs and polymerase inhibitors for other viruses (e.g., hepatitis B).

Less selective nucleoside analogues are used aschemotherapy agents to treatcancer, e.g.gemcitabine. They are also used asantiplatelet drugs to prevent the formation of blood clots,ticagrelor andcangrelor.

Resistance

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Resistance can develop quickly with as little as one mutation.[4] Mutations occur in the enzymes that phosphorylate the drug and activate it: in the case ofherpes simplex, resistance toacyclovir[5] arises due to a mutation affecting the viral enzymethymidine kinase[6]. Since nucleoside analogues require two phosphorylations to be activated, one carried out by a viral enzyme and the other by enzymes in the host cell, mutations in viral thymidine kinase interfere with the first of these phosphorylations; in such cases the drug remains ineffective. There are, however, several different nucleoside analogue drugs and resistance to one of them is usually overcome by switching to another drug of the same kind (e.g.famciclovir,penciclovir,valaciclovir).

Examples

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Nucleoside analogue drugs include:

Related drugs arenucleobase analogs, which don't include a sugar or sugar analog, andnucleotide analogues, which also include phosphate groups.

See also

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References

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  1. ^Seley-Radtke, KL; Yates, MK (June 2018)."The evolution of nucleoside analogue antivirals: A review for chemists and non-chemists. Part 1: Early structural modifications to the nucleoside scaffold".Antiviral Research.154:66–86.doi:10.1016/j.antiviral.2018.04.004.PMC 6396324.PMID 29649496.
  2. ^Gizzi AS, Grove TL, Arnold JJ, Jose J, Jangra RK, Garforth SJ, et al. (June 2018)."A naturally occurring antiviral ribonucleotide encoded by the human genome".Nature.558 (7711). Springer Science and Business Media LLC:610–614.Bibcode:2018Natur.558..610G.doi:10.1038/s41586-018-0238-4.PMC 6026066.PMID 29925952.
  3. ^Vedel, M; Lawrence, F; Robert-Gero, M; Lederer, E (14 November 1978). "The antifungal antibiotic sinefungin as a very active inhibitor of methyltransferases and of the transformation of chick embryo fibroblasts by Rous sarcoma virus".Biochemical and Biophysical Research Communications.85 (1):371–6.doi:10.1016/s0006-291x(78)80052-7.PMID 217377.
  4. ^"Herpes Prevention".congresouniversitariomovil.com. Retrieved14 November 2017.[dead link]
  5. ^Schalkwijk, Hanna H.; Snoeck, Robert; Andrei, Graciela (2022-12-01)."Acyclovir resistance in herpes simplex viruses: Prevalence and therapeutic alternatives".Biochemical Pharmacology.206 115322.doi:10.1016/j.bcp.2022.115322.ISSN 0006-2952.
  6. ^Labrunie, Thibault; Ducastelle, Sophie; Domenech, Carine; Ader, Florence; Morfin, Florence; Frobert, Emilie (2019-08-01)."UL23, UL30, and UL5 characterization of HSV1 clinical strains isolated from hematology department patients".Antiviral Research.168:114–120.doi:10.1016/j.antiviral.2019.05.012.ISSN 0166-3542.

Further reading

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DNA virusantivirals (primarilyJ05, alsoS01AD andD06BB)
Baltimore I
Herpesvirus
DNA-synthesis
inhibitor
TK activated
Purine analogue
Pyrimidine analogue
Not TK activated
Other
HPV/MC
Vaccinia
Poxviridae
Hepatitis B (VII)
Multiple/general
Nucleic acid inhibitors
Interferon
Multiple/unknown
Capsid inhibitors
Entry/fusion inhibitors
(Discovery and development)
Integrase inhibitors
(Integrase strand transfer inhibitors (INSTI))
Maturation inhibitors
Protease Inhibitors (PI)
(Discovery and development)
1st generation
2nd generation
Reverse-transcriptase
inhibitors
(RTIs)
Nucleoside and
nucleotide (NRTI)
Non-nucleoside (NNRTI)
(Discovery and development)
1st generation
2nd generation
Combined formulations
Pharmacokinetic boosters
Experimental agents
Uncoating inhibitors
Transcription inhibitors
Translation inhibitors
BNAbs
Other
Failed agents
°DHHSrecommendedinitial regimen options.Formerly or rarely used agent.
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