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NPAS3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
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NPAS3
Identifiers
AliasesNPAS3, neuronal PAS domain protein 3, MOP6, PASD6, bHLHe12
External IDsOMIM:609430;MGI:1351610;HomoloGene:8461;GeneCards:NPAS3;OMA:NPAS3 - orthologs
Gene location (Human)
Chromosome 14 (human)
Chr.Chromosome 14 (human)[1]
Chromosome 14 (human)
Genomic location for NPAS3
Genomic location for NPAS3
Band14q13.1Start32,934,396bp[1]
End33,820,863bp[1]
Gene location (Mouse)
Chromosome 12 (mouse)
Chr.Chromosome 12 (mouse)[2]
Chromosome 12 (mouse)
Genomic location for NPAS3
Genomic location for NPAS3
Band12|12 C1Start53,248,677bp[2]
End54,072,175bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • endothelial cell

  • ventricular zone

  • corpus callosum

  • buccal mucosa cell

  • globus pallidus

  • internal globus pallidus

  • external globus pallidus

  • optic nerve

  • inferior ganglion of vagus nerve

  • entorhinal cortex
Top expressed in
  • substantia nigra

  • lumbar subsegment of spinal cord

  • deep cerebellar nuclei

  • dorsal tegmental nucleus

  • fossa

  • globus pallidus

  • dorsomedial hypothalamic nucleus

  • ventral tegmental area

  • condyle

  • lateral hypothalamus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

64067

27386

Ensembl

ENSG00000151322

ENSMUSG00000021010

UniProt

Q8IXF0

Q9QZQ0

RefSeq (mRNA)
NM_001164749
NM_001165893
NM_022123
NM_173159
NM_001394988

NM_001394989

NM_013780

RefSeq (protein)

NP_001158221
NP_001159365
NP_071406
NP_775182

NP_038808

Location (UCSC)Chr 14: 32.93 – 33.82 MbChr 12: 53.25 – 54.07 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

NPAS3 orNeuronal PAS domain protein 3 is a brain-enrichedtranscription factor belonging to thebHLH-PAS superfamily of transcription factors, the members of which carry out diverse functions, includingcircadian oscillations,neurogenesis,toxinmetabolism,hypoxia, andtracheal development. NPAS3 contains abasic helix-loop-helix structural motif and twoPAS domain, like the other proteins in the superfamily.

It functions as an heterodimer by bindingARNT2, another member of the bHLH-PAS superfamily.[5]

Function

[edit]

NPAS3 harbors the largest cluster ofhuman accelerated regions, suggesting it may have played a key role inhuman evolution.[6] Among this accelerated elements, HAR202 is particularly fascinating due to its differential activity between modern humans andarchaic species, even though it has only been reported in animal reporter assays.[7]

From the first set of human accelerated regions described in 2006,NPAS3locus overlaps one of the most accelerated sequences, HAR21 .[8]

NPAS1 and NPAS3-deficient mice display behavioral abnormalities typical to theanimal models ofschizophrenia.[9] Targeting the gene in astrocytes leads to autistic-like behaviours such as reduced vocalization and socialization.[10]

According to the same study,NPAS1 andNPAS3 disruption leads to reduced expression ofreelin, which is also consistently found to be reduced in the brains of human patients withschizophrenia and psychoticbipolar disorder.

Recent advances in mouse models have further characterizedNPAS3 function and identified key roles inastrogenesis,adult neurogenesis and ininhibitory interneuronsdifferentiation.[10][11][12]

Clinical significance

[edit]

Disruption of NPAS3 was found in one family affected by schizophrenia[13] and NPAS3 gene is thought to be associated with psychiatric illness and learning disability.[14][15] In a genetic study of several hundred subjects conducted in 2008, interactinghaplotypes at the NPAS3 locus were found to affect the risk of schizophrenia andbipolar disorder.[16]

In apharmacogenetical study, polymorphisms in NPAS3 gene were highly associated with response toiloperidone, a proposed atypical antipsychotic.[17]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000151322Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000021010Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Rossi JJ, Rosenfeld JA, Chan KM, Streff H, Nankivell V, Peet DJ, et al. (March 2021)."Molecular characterisation of rare loss-of-function NPAS3 and NPAS4 variants identified in individuals with neurodevelopmental disorders".Scientific Reports.11 (1): 6602.doi:10.1038/s41598-021-86041-4.PMC 7987981.PMID 33758288.
  6. ^Kamm GB, Pisciottano F, Kliger R, Franchini LF (May 2013)."The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome".Molecular Biology and Evolution.30 (5):1088–1102.doi:10.1093/molbev/mst023.PMC 3670734.PMID 23408798.
  7. ^Caporale AL, Cinalli AR, Rubinstein M, Franchini LF (October 2024). Wittkopp P (ed.)."The Human Accelerated Region HAR202 Controls NPAS3 Expression in the Developing Forebrain Displaying Differential Enhancer Activity Between Modern and Archaic Human Sequences".Molecular Biology and Evolution.41 (10).doi:10.1093/molbev/msae186.PMC 11461159.PMID 39241178.
  8. ^Pollard KS, Salama SR, Lambert N, Lambot MA, Coppens S, Pedersen JS, et al. (September 2006). "An RNA gene expressed during cortical development evolved rapidly in humans".Nature.443 (7108):167–172.Bibcode:2006Natur.443..167P.doi:10.1038/nature05113.hdl:2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/51805.PMID 16915236.S2CID 18107797.
  9. ^Erbel-Sieler C, Dudley C, Zhou Y, Wu X, Estill SJ, Han T, et al. (September 2004)."Behavioral and regulatory abnormalities in mice deficient in the NPAS1 and NPAS3 transcription factors".Proceedings of the National Academy of Sciences of the United States of America.101 (37):13648–13653.Bibcode:2004PNAS..10113648E.doi:10.1073/pnas.0405310101.PMC 518807.PMID 15347806.
  10. ^abLi Y, Fan T, Li X, Liu L, Mao F, Li Y, et al. (August 2022)."Npas3 deficiency impairs cortical astrogenesis and induces autistic-like behaviors".Cell Reports.40 (9) 111289.doi:10.1016/j.celrep.2022.111289.PMID 36044858.
  11. ^Pieper AA, Wu X, Han TW, Estill SJ, Dang Q, Wu LC, et al. (September 2005)."The neuronal PAS domain protein 3 transcription factor controls FGF-mediated adult hippocampal neurogenesis in mice".Proceedings of the National Academy of Sciences of the United States of America.102 (39):14052–14057.doi:10.1073/pnas.0506713102.PMC 1216832.PMID 16172381.
  12. ^Stanco A, Pla R, Vogt D, Chen Y, Mandal S, Walker J, et al. (December 2014). "NPAS1 represses the generation of specific subtypes of cortical interneurons".Neuron.84 (5):940–953.doi:10.1016/j.neuron.2014.10.040.PMID 25467980.
  13. ^Kamnasaran D, Muir WJ, Ferguson-Smith MA, Cox DW (May 2003)."Disruption of the neuronal PAS3 gene in a family affected with schizophrenia".Journal of Medical Genetics.40 (5):325–332.doi:10.1136/jmg.40.5.325.PMC 1735455.PMID 12746393.
  14. ^Pickard BS, Malloy MP, Porteous DJ, Blackwood DH, Muir WJ (July 2005). "Disruption of a brain transcription factor, NPAS3, is associated with schizophrenia and learning disability".American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics.136B (1):26–32.doi:10.1002/ajmg.b.30204.PMID 15924306.S2CID 33879828.
  15. ^Pickard BS, Pieper AA, Porteous DJ, Blackwood DH, Muir WJ (2006)."The NPAS3 gene--emerging evidence for a role in psychiatric illness".Annals of Medicine.38 (6):439–448.doi:10.1080/07853890600946500.PMID 17008307.
  16. ^Pickard BS, Christoforou A, Thomson PA, Fawkes A, Evans KL, Morris SW, et al. (September 2009)."Interacting haplotypes at the NPAS3 locus alter risk of schizophrenia and bipolar disorder".Molecular Psychiatry.14 (9):874–884.doi:10.1038/mp.2008.24.PMID 18317462.
  17. ^Lavedan C, Volpi S, Mack K, Heaton C, Lannan R, Hamilton J, et al. (October 2007)."Whole Genome Association Study Identifies Polymorphisms in the NPAS3 Gene Associated With Enhanced Response to Iloperidone Treatment in Patients With Schizophrenia"(PDF).Vanda Pharmaceuticals (Conference poster (American Society of Human Genetics 57th Annual Meeting, San Diego, October 23–27, 2007)). Vanda Pharmaceuticals Inc. Retrieved27 August 2025.

Further reading

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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