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NLRC4

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NLRC4
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4KXF

Identifiers
AliasesNLRC4, CARD12, CLAN, CLAN1, CLANA, CLANB, CLANC, CLAND, CLR2.1, IPAF, AIFEC, FCAS4, NLR family, CARD domain containing 4, NLR family CARD domain containing 4
External IDsOMIM:606831;MGI:3036243;HomoloGene:10924;GeneCards:NLRC4;OMA:NLRC4 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for NLRC4
Genomic location for NLRC4
Band2p22.3Start32,224,453bp[1]
End32,265,732bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for NLRC4
Genomic location for NLRC4
Band17|17 E2Start74,732,433bp[2]
End74,766,137bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • monocyte

  • blood

  • granulocyte

  • gonad

  • trabecular bone

  • testicle

  • bone marrow

  • bone marrow cells

  • spleen

  • appendix
Top expressed in
  • jejunum

  • ileum

  • zygote

  • duodenum

  • colon

  • secondary oocyte

  • primary oocyte

  • proximal tubule

  • spleen

  • stomach
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

58484

268973

Ensembl

ENSG00000091106

ENSMUSG00000039193

UniProt

Q9NPP4

Q3UP24

RefSeq (mRNA)

NM_001199138
NM_001199139
NM_001302504
NM_021209

NM_001033367

RefSeq (protein)

NP_001186067
NP_001186068
NP_001289433
NP_067032

NP_001028539

Location (UCSC)Chr 2: 32.22 – 32.27 MbChr 17: 74.73 – 74.77 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

NLR family CARD domain-containing protein 4 is aprotein that in humans is encoded by theNLRC4gene.[5][6]

Structure

[edit]

The NLRC4 protein is highly conserved across mammalian species. It bears homology to theC. elegans Ced4 protein. It contains an N-terminalCARD domain, a central nucleotide binding/NACHT domain, and a C-terminal leucine rich repeat (LRR) domain. It belongs to a family of NLR proteins that includes the transcriptional co-activatorCIITA and the canonical inflammasome proteinNLRP3. A truncated murine NLRC4 was the first member of this family whose crystal structure was solved.[7]

Function

[edit]

NLRC4 is best associated with triggering formation of theinflammasome. Unlike NLRP3, certain inflammasome-dependent functions of NLRC4 may be carried out independently of the inflammasome scaffoldASC. Human Ced4 homologs includeAPAF1,NOD1 (CARD4), andNOD2 (CARD15). These proteins have at least 1N-terminal CARD domain followed by a centrally located nucleotide-binding domain (NBD or NACHT) and aC-terminal regulatory domain, found only in mammals, that contains eitherWD40 repeats orleucine-rich repeats (LRRs). CARD12 is a member of the Ced4 family and can induceapoptosis.[6]

Interactions

[edit]

NLRC4 has been shown tointeract with NAIP (there is one human NAIP but mice express at least 4 distinct NAIP proteins). The NAIP/NLRC4 interaction may determine the ligand specificity.[8] NLRC4-dependent inflammasome activity activatesCASP1.[9] Under certain circumstances, NLRC4 and NLRP3 may occupy the same inflammasome complex.[10]

Clinical significance

[edit]

Humans bearing activating mutations in NLRC4 can develop anautoinflammatory syndrome characterized by acute fever, hepatitis, very high serum ferritin, and other features suggestive ofMacrophage Activation Syndrome (MAS). Some patients also developed a potentially life-threatening enterocolitis that abated during early childhood.[11][12] In these patients, chronic and extraordinary elevation of serumIL-18 is found, in distinction from patients with NLRP3 mutations who developCryopyrin Associated Periodic Syndromes.[11] A large Japanese family had much milder disease associated with cold-induced urticaria that was caused by a dominantly inherited NLRC4 mutation.[13]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000091106Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000039193Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Geddes BJ, Wang L, Huang WJ, Lavellee M, Manji GA, Brown M, Jurman M, Cao J, Morgenstern J, Merriam S, Glucksmann MA, DiStefano PS, Bertin J (Jun 2001). "Human CARD12 is a novel CED4/Apaf-1 family member that induces apoptosis".Biochemical and Biophysical Research Communications.284 (1):77–82.doi:10.1006/bbrc.2001.4928.PMID 11374873.
  6. ^ab"Entrez Gene: NLRC4 NLR family, CARD domain containing 4".
  7. ^Hu Z, Yan C, Liu P, Huang Z, Ma R, Zhang C, Wang R, Zhang Y, Martinon F, Miao D, Deng H, Wang J, Chang J, Chai J (Jul 2013)."Crystal structure of NLRC4 reveals its autoinhibition mechanism".Science.341 (6142):172–5.Bibcode:2013Sci...341..172H.doi:10.1126/science.1236381.PMID 23765277.S2CID 12360722.
  8. ^Kofoed EM, Vance RE (Sep 2011)."Innate immune recognition of bacterial ligands by NAIPs determines inflammasome specificity".Nature.477 (7366):592–5.Bibcode:2011Natur.477..592K.doi:10.1038/nature10394.PMC 3184209.PMID 21874021.
  9. ^Damiano JS, Oliveira V, Welsh K, Reed JC (Jul 2004)."Heterotypic interactions among NACHT domains: implications for regulation of innate immune responses".The Biochemical Journal.381 (Pt 1):213–9.doi:10.1042/BJ20031506.PMC 1133779.PMID 15107016.
  10. ^Man SM, Hopkins LJ, Nugent E, Cox S, Glück IM, Tourlomousis P, Wright JA, Cicuta P, Monie TP, Bryant CE (May 2014)."Inflammasome activation causes dual recruitment of NLRC4 and NLRP3 to the same macromolecular complex"(PDF).Proceedings of the National Academy of Sciences of the United States of America.111 (20):7403–8.Bibcode:2014PNAS..111.7403M.doi:10.1073/pnas.1402911111.PMC 4034195.PMID 24803432.
  11. ^abCanna SW, de Jesus AA, Gouni S, Brooks SR, Marrero B, Liu Y, DiMattia MA, Zaal KJ, Sanchez GA, Kim H, Chapelle D, Plass N, Huang Y, Villarino AV, Biancotto A, Fleisher TA, Duncan JA, O'Shea JJ, Benseler S, Grom A, Deng Z, Laxer RM, Goldbach-Mansky R (Oct 2014)."An activating NLRC4 inflammasome mutation causes autoinflammation with recurrent macrophage activation syndrome".Nature Genetics.46 (10):1140–6.doi:10.1038/ng.3089.PMC 4177369.PMID 25217959.
  12. ^Romberg N, Al Moussawi K, Nelson-Williams C, Stiegler AL, Loring E, Choi M, Overton J, Meffre E, Khokha MK, Huttner AJ, West B, Podoltsev NA, Boggon TJ, Kazmierczak BI, Lifton RP (Oct 2014)."Mutation of NLRC4 causes a syndrome of enterocolitis and autoinflammation".Nature Genetics.46 (10):1135–9.doi:10.1038/ng.3066.PMC 4177367.PMID 25217960.
  13. ^Kitamura A, Sasaki Y, Abe T, Kano H, Yasutomo K (Nov 2014)."An inherited mutation in NLRC4 causes autoinflammation in human and mice".The Journal of Experimental Medicine.211 (12):2385–96.doi:10.1084/jem.20141091.PMC 4235634.PMID 25385754.

Further reading

[edit]
CARD domain containing
Pyrin domain containing
Apoptosis inhibitory protein
Family member X1
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