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NKX2-2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NKX2-2
Identifiers
AliasesNKX2-2, NKX2.2, NKX2B, NK2 homeobox 2
External IDsOMIM:604612;MGI:97347;HomoloGene:1879;GeneCards:NKX2-2;OMA:NKX2-2 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for NKX2-2
Genomic location for NKX2-2
Band20p11.22Start21,511,017bp[1]
End21,514,064bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for NKX2-2
Genomic location for NKX2-2
Band2 G2|2 72.63 cMStart147,177,546bp[2]
End147,194,243bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • inferior ganglion of vagus nerve

  • subthalamic nucleus

  • medulla oblongata

  • superior vestibular nucleus

  • ventral tegmental area

  • inferior olivary nucleus

  • spinal cord

  • C1 segment

  • external globus pallidus

  • pars reticulata
Top expressed in
  • islet of Langerhans

  • lumbar subsegment of spinal cord

  • optic nerve

  • central gray substance of midbrain

  • ventral nucleus of lateral geniculate body

  • embryo

  • anterior horn of spinal cord

  • nucleus of stria terminalis

  • hypothalamus

  • cerebellar cortex
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4821

18088

Ensembl

ENSG00000125820

ENSMUSG00000027434

UniProt

O95096

P42586

RefSeq (mRNA)

NM_002509

NM_001077632
NM_010919

RefSeq (protein)

NP_002500

NP_001071100
NP_035049

Location (UCSC)Chr 20: 21.51 – 21.51 MbChr 2: 147.18 – 147.19 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein Nkx-2.2 is aprotein that in humans is encoded by theNKX2-2gene.[5][6][7]

Homeobox protein Nkx-2.2 contains ahomeobox domain and may be involved in themorphogenesis of the central nervous system. This gene is found on chromosome 20 nearNKX2-4, and these two genes appear to be duplicated on chromosome 14 in the form ofTITF1 andNKX2-8. The encoded protein is likely to be a nucleartranscription factor.[7]

Theexpression of Nkx2-2 is regulated by an antisense RNA calledNkx2-2as.[8]

In the developing spinal cord, Nkx-2.2 regulatesIRX3 thereby contributing to the proper differentiation of the ventral horn neurons.[9]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000125820Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000027434Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Furuta H, Horikawa Y, Iwasaki N, Hara M, Sussel L, Le Beau MM, Davis EM, Ogata M, Iwamoto Y, German MS, Bell GI (Aug 1998). "Beta-cell transcription factors and diabetes: mutations in the coding region of the BETA2/NeuroD1 (NEUROD1) and Nkx2.2 (NKX2B) genes are not associated with maturity-onset diabetes of the young in Japanese".Diabetes.47 (8):1356–1358.doi:10.2337/diabetes.47.8.1356.PMID 9703340.
  6. ^Price M, Lazzaro D, Pohl T, Mattei MG, Rüther U, Olivo JC, Duboule D, Di Lauro R (Feb 1992). "Regional expression of the homeobox gene Nkx-2.2 in the developing mammalian forebrain".Neuron.8 (2):241–255.doi:10.1016/0896-6273(92)90291-K.PMID 1346742.S2CID 22766848.
  7. ^ab"Entrez Gene: NKX2-2 NK2 transcription factor related, locus 2 (Drosophila)".
  8. ^Tochitani S, Hayashizaki Y (Aug 2008). "Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation".Biochemical and Biophysical Research Communications.372 (4):691–696.doi:10.1016/j.bbrc.2008.05.127.PMID 18538132.
  9. ^Lovrics A, Gao Y, Juhász B, Bock I, Byrne HM, Dinnyés A, Kovács KA (November 2014)."Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord".PLOS ONE.9 (11) e111430.Bibcode:2014PLoSO...9k1430L.doi:10.1371/journal.pone.0111430.PMC 4232242.PMID 25398016.

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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