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NFE2L1

This article was updated by an external expert under a dual publication model. The corresponding peer-reviewed article was published in the journal Gene. Click to view.
From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

NFE2L1
Identifiers
AliasesNFE2L1, LCR-F1, NRF1, TCF11, nuclear factor, erythroid 2 like 1, NRF-1, NFE2 like bZIP transcription factor 1
External IDsOMIM:163260;MGI:99421;HomoloGene:20685;GeneCards:NFE2L1;OMA:NFE2L1 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for NFE2L1
Genomic location for NFE2L1
Band17q21.32Start48,048,329bp[1]
End48,061,545bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for NFE2L1
Genomic location for NFE2L1
Band11 D|11 60.12 cMStart96,708,240bp[2]
End96,720,794bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • glutes

  • gastrocnemius muscle

  • thoracic diaphragm

  • skeletal muscle tissue

  • tibialis anterior muscle

  • muscle of thigh

  • Skeletal muscle tissue of rectus abdominis

  • Skeletal muscle tissue of biceps brachii

  • Achilles tendon

  • triceps brachii muscle
Top expressed in
  • muscle of thigh

  • neural layer of retina

  • dentate gyrus of hippocampal formation granule cell

  • lip

  • choroid plexus of fourth ventricle

  • superior frontal gyrus

  • tail of embryo

  • primary visual cortex

  • ankle

  • genital tubercle
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4779

18023

Ensembl

ENSG00000082641

ENSMUSG00000038615

UniProt

Q14494

Q61985

RefSeq (mRNA)

NM_003204
NM_001330261
NM_001330262

NM_001130450
NM_001130451
NM_001130452
NM_001130453
NM_001130454

NM_008686
NM_001361682

RefSeq (protein)

NP_001317190
NP_001317191
NP_003195

NP_001123922
NP_001123923
NP_001123924
NP_001123925
NP_001123926

NP_032712
NP_001348611

Location (UCSC)Chr 17: 48.05 – 48.06 MbChr 11: 96.71 – 96.72 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Nuclear factor erythroid 2-related factor 1 (Nrf1) also known asnuclear factor erythroid-2-like 1 (NFE2L1) is aprotein that in humans is encoded by theNFE2L1gene.[5][6][7] Since NFE2L1 is also referred to as Nrf1, it is often confused withnuclear respiratory factor 1.

NFE2L1 is a cap 'n' collar,basic-leucine zipper (bZIP) transcription factor. Several isoforms of NFE2L1 have been described for both human and mouse genes. NFE2L1 was first cloned in yeast using a genetic screening method. NFE2L1 is ubiquitously expressed, and high levels of transcript are detected in the heart, kidney, skeletal muscle, fat, and brain.[5] Four separate regions — an asparagine/serine/threonine, acidic domains near theN-terminus, and a serine-rich domain located near the CNC motif — are required for full transactivation function of NFE2L1.[8][9][10] NFE2L1 is a key regulator of cellular functions includingoxidative stress response, differentiation, inflammatory response, metabolism, cholesterol handling[11] and maintainingproteostasis.

Interactions

[edit]

NFE2L1 binds DNA as heterodimers with one ofsmall Maf proteins (MAFF,MAFG,MAFK).[12][13][10] NFE2L1 has been shown tointeract withC-jun.[14]

Cellular homeostasis

[edit]

NFE2L1 regulates a wide variety of cellular responses, several of which are related to important aspects of protection from stress stimuli. NFE2L1 is involved in providing cellular protection against oxidative stress through the induction of antioxidant genes. Theglutathione synthesis pathway is catalyzed byglutamate-cysteine ligase, which contains the catalyticGCLC and regulatoryGCLM, andglutathione synthetase (GSS).[15] NFE2L1 was found to regulate Gclm and Gss expression in mouse fibroblasts.[16] Gclm was found to be a direct target of NFE2L1. NFE2L1 also regulates Gclc expression through an indirect mechanism.[17][18] NFE2L1 knockout mice also exhibit down-regulation ofGpx1-,Hmox1-, and NFE2L1-deficienthepatocytes from liver-specific NFE2L1 knockout mice showed decreased expression of various Gst genes.[19][20] Metallothioenein-1 and Metallothioenein-2 genes, which protect cells againstcytotoxicity induced by toxic metals, are also direct targets of NFE2L1.[21]

NFE2L1 is also involved in maintaining proteostasis. Brains of mice withconditional knockout of NFE2L1 in neuronal cells showed decreased proteasome activity and accumulation ofubiquitin-conjugated proteins, and down regulation of genes encoding the 20S core and 19S regulatory sub-complexes of the 26Sproteasome.[22] A similar effect on proteasome gene expression and function was observed in livers of mice with NFE2L1 conditional knockout in hepatocytes.[23] Induction of proteasome genes was also lost in brains and livers of NFE2L1 conditional knockout mice. Re-establishment of NFE2L1 function in NFE2L1 null cells rescued proteasome expression and function, indicating NFE2L1 was necessary for induction of proteasome genes (bounce-back response) in response to proteasome inhibition.[24] This compensatory up-regulation of proteasome genes in response to proteasome inhibition has also been demonstrated to be NFE2L1-dependent in various other cell types.[25][26] NFE2L1 was shown to directly bind and activate expression of thePsmB6 gene, which encodes a catalytic subunit of the 20S core.[22][24] In the retina, it was shown that NFE2L1 overexpression increases and knockout reduces proteasomal levels and activity.[27] NFE2L1 was also shown to regulate expression of Herpud1 and Vcp/p97, which are components of the ER-associated degradation pathway.[28][26]

NFE2L1 also plays a role in metabolic processes. Loss of hepatic NFE2L1 has been shown to result in lipid accumulation, hepatocellular damage, cysteine accumulation, and altered fatty acid composition.[20][29] Glucose homeostasis and insulin secretion have also been found to be under the control of NFE2L1.[30] Insulin-regulated glycolytic genes—Gck,Aldob,Pgk1, andPklr, hepatic glucose transporter gene —SLC2A2, and gluconeogenic genes —Fbp1 andPck1 were repressed in livers of NFE2L1 transgenic mice.[31] NFE2L1 may also play a role in maintaining chromosomal stability and genomic integrity by inducing expression of genes encoding components of the spindle assembly and kinetochore.[32] NFE2L1 has also been shown to sense and respond to excess cholesterol in theER.[11]

Regulation

[edit]

NFE2L1 is an ER membrane protein. ItsN-terminal domain (NTD) anchors the protein to the membrane. Specifically,amino acid residues 7 to 24 are known to be a hydrophobic domain that serves as a transmembrane region.[33] The concerted mechanism of HRD1, a member ofE3-ubiquitin ligase family, and p97/VCP1 was found to play an important role in the degradation of NFE2L1 through the ER Associated Degradation (ERAD) pathway and the release of NFE2L1 from theER membrane.[25][34][35] NFE2L1 is also regulated by other ubiquitin ligases andkinases.FBXW7, a member of theSCF ubiquitin ligase family, targets NFE2L1 for proteolytic degradation by the proteasome.[36] FBXW7 requires the Cdc4 phosphodegron domain within NFE2L1 to be phosphorylated via Glycogen Kinase 3.[37] Casein Kinase 2 was shown to phosphorylate Ser497 of NFE2L1, which attenuates the activity of NFE2L1 on proteasome gene expression.[38] NFE2L1 also interacts with another member of the SCF ligase ubiquitin family known asβ-TrCP. β-TrCP also binds to the DSGLC motif, a highly conserved region of CNC-bZIP proteins, in order topolyubiquitinate NFE2L1 prior to its proteolytic degradation.[34]Phosphorylation of Ser599 by protein kinase A enables NFE2L1 andC/EBP-β to dimerize to repressDSPP expression duringodontoblast differentiation.[39] NFE2L1 expression and activation is also controlled by cellular stresses. Oxidative stress induced byarsenic and t-butyl hydroquinone leads to accumulation of the NFE2L1 protein inside the nucleus as well as higher activation onantioxidant genes.[9][40] Treatment with anER stress inducer,tunicamycin, was shown to induce accumulation of NFE2L1 inside the nucleus; however, it was not associated with increased activity, suggesting further investigation is needed to explain the role of ER stress on NFE2L1.[41][9] Hypoxia was also shown to increase the expression of NFE2L1 while attenuating expression of the p65 isoform of NFE2L1.[42] Growth factors affect expression of NFE2L1 through an mTORC andSREBP-1 mediated pathway. Growth factors induce higher activity of mTORC, which then promotes activity of its downstream protein SREBP-1, a transcription factor for NFE2L1.[43][44]

Animal studies

[edit]

Loss and gain of function studies in mice showed that dysregulation of NFE2L1 leads to pathological states that could have relevance in human diseases. NFE2L1 is crucial for embryonic development and survival of hepatocytes during development.[6][19] Loss of NFE2L1 in mouse hepatocytes leads tosteatosis,inflammation, andtumorigenesis.[20] NFE2L1 is also necessary for neuronal homeostasis.[22] Loss of NFE2L1 function is also associated withinsulin resistance. Mice with conditional deletion of NFE2L1 in pancreatic β-cells exhibited severe fastinghyperinsulinemia andglucose intolerance, suggesting that NFE2L1 may play a role in the development oftype-2 diabetes.[30] Recent studies showed that Nfe2l1 overexpression is safe and supports viability of photoreceptors in mouse model of human blindness.[27] Future studies may provide therapeutic efforts involving NFE2L1 forcancer,neurodegeneration, andmetabolic diseases.[citation needed]

Notes

[edit]

Journal
The 2016 version of this article was updated by an external expert under a dual publication model. The correspondingacademic peer reviewed article was published inGene and can be cited as:
Hyun Min Kim, Jeong Woo Han, Jefferson Y Chan (3 March 2016)."Nuclear Factor Erythroid-2 Like 1 (NFE2L1): Structure, function and regulation".Gene. Gene Wiki Review Series.584 (1):17–25.doi:10.1016/J.GENE.2016.03.002.ISSN 0378-1119.PMC 6636332.PMID 26947393.Wikidata Q38762571.

References

[edit]
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  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038615Ensembl, May 2017
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  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
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  20. ^abcXu Z, Chen L, Leung L, Yen TS, Lee C, Chan JY (Mar 2005)."Liver-specific inactivation of the Nrf1 gene in adult mouse leads to nonalcoholic steatohepatitis and hepatic neoplasia".Proceedings of the National Academy of Sciences of the United States of America.102 (11):4120–5.Bibcode:2005PNAS..102.4120X.doi:10.1073/pnas.0500660102.PMC 554825.PMID 15738389.
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  27. ^abWang Y, Snell A, Dyka FM, Colvin ER, Ildefonso C, Ash JD, et al. (July 2023)."Overexpression of Nfe2l1 increases proteasome activity and delays vision loss in a preclinical model of human blindness".Science Advances.9 (28) eadd5479.doi:10.1126/sciadv.add5479.PMC 10348684.PMID 37450596.
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Further reading

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External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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