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Myxobacteria

From Wikipedia, the free encyclopedia
(Redirected fromMyxococcia)
Order of bacteria
Not to be confused withSlime mold.

Myxobacteria
Myxococcus xanthus
Scientific classificationEdit this classification
Domain:Bacteria
Kingdom:Pseudomonadati
Phylum:Myxococcota
Class:Myxococcia
Waite et al. 2020[1]
Order:Myxococcales
Tchan et al. 1948
Families & genera
Synonyms
  • "Myxococcia"Oren, Parte & Garrity 2016
  • "Myxococcidae"Cavalier-Smith 2020
  • "Myxoschizomycetes"

Themyxobacteria ("slime bacteria") are a group ofbacteria that predominantly live in the soil and feed on insoluble organic substances. The myxobacteria have very largegenomes relative to other bacteria, e.g. 9–10 millionnucleotides except forAnaeromyxobacter[2] andVulgatibacter.[3] One species of myxobacteria,Minicystis rosea,[4] has the largest known bacterial genome with over 16 million nucleotides. The second largest is another myxobacteriaSorangium cellulosum.[5][6]

Myxobacteria can move bygliding.[7] They typically travel inswarms (also known aswolf packs), containing manycells kept together by intercellular molecularsignals. Individuals benefit from aggregation as it allows accumulation of the extracellularenzymes that are used to digest food; this in turn increases feeding efficiency. Myxobacteria produce a number of biomedically and industrially useful chemicals, such asantibiotics, and export those chemicals outside the cell.[8]

Myxobacteria are used to study the polysaccharide production in gram-negative bacteria like the modelMyxococcus xanthus which have four different mechanisms[9] of polysaccharide secretion and where a new Wzx/Wzy mechanism producing a newpolysaccharide was identified in 2020.[9]

Myxobacteria are also good models to studymulticellularity in thebacterial world.[10]

Life cycle

[edit]

When nutrients are scarce, myxobacterial cells aggregate intofruiting bodies (not to be confused withthose in fungi), a process long-thought to be mediated bychemotaxis but now considered to be a function of a form of contact-mediated signaling.[11][12] These fruiting bodies can take different shapes and colors, depending on the species. Within the fruiting bodies, cells begin as rod-shaped vegetative cells, and develop into rounded myxospores with thick cell walls. These myxospores, analogous tospores in other organisms, are more likely to survive until nutrients are more plentiful. The fruiting process is thought to benefit myxobacteria by ensuring thatcell growth is resumed with a group (swarm) of myxobacteria, rather than as isolated cells. Similar life cycles have developed among certainamoebae, called cellularslime molds.

At a molecular level, initiation of fruiting body development inMyxococcus xanthus is regulated byPxr sRNA.[13][14]

Myxobacteria such asMyxococcus xanthus andStigmatella aurantiaca are used asmodel organisms for the study of development.

Various myxobacterial species as sketched by Roland Thaxter in 1892:Chondromyces crocatus (figs. 1–11),Stigmatella aurantiaca (figs. 12–19 and 25-28),Melittangium lichenicola (figs. 20–23),Archangium gephyra (fig. 24),Myxococcus coralloides (figs. 29-33),Polyangium vitellinum (figs. 34-36), andMyxococcus fulvus (figs. 37-41). Thaxter was the first taxonomist to recognize the bacterial nature of the myxobacteria. Previously, they had been misclassified as members of thefungi imperfecti.[15]

It has been suggested that the last common ancestor of myxobacteria was an aerobe and that their anaerobic predecessors lived syntrophically with early eukaryotes.[16]

Clinical use

[edit]

Metabolites secreted bySorangium cellulosum known asepothilones have been noted to haveantineoplastic activity. This has led to the development ofanalogs which mimic its activity. One such analog, known asIxabepilone is aU.S. Food and Drug Administration approved chemotherapy agent for the treatment ofmetastaticbreast cancer.[17]

Myxobacteria are also known to producegephyronic acid, an inhibitor of eukaryotic protein synthesis and a potential agent for cancer chemotherapy.[18]

Phylogeny

[edit]

The currently accepted taxonomy is based on theList of Prokaryotic names with Standing in Nomenclature (LPSN)[19] andNational Center for Biotechnology Information (NCBI)[20]

16S rRNA basedLTP_10_2024[21][22][23]120 marker proteins basedGTDB 09-RS220[24][25][26]
Bradymonadia

MicrovenatoraceaeWang, Chen & Du 2022

BradymonadaceaeWang et al. 2015

LujinxingiaceaeWang, Chen & Du 2022

Bradymonadales
Myxococcia

AnaeromyxobacteraceaeYamamoto et al. 2014

VulgatibacteraceaeYamamoto et al. 2014

MyxococcaceaeJahn 1924

Myxococcales
Polyangiia
Haliangiales

KofleriaceaeReichenbach 2007
[incl.Haliangiaceae]

Nannocystales

NannocystaceaeReichenbach 2006

Polyangiales

SandaracinaceaeMohr et al. 2012

PolyangiaceaeJahn 1924

Bradymonadia
Bradymonadales

Bradymonadaceae [incl. Lujinxingiaceae;
Microvenatoraceae]

Polyangiia
Haliangiales

HaliangiaceaeWaite et al. 2020

Nannocystales

Nannocystaceae

See also

[edit]

References

[edit]
  1. ^Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. (2020)."Proposal to reclassify the proteobacterial classesDeltaproteobacteria andOligoflexia, and the phylumThermodesulfobacteria into four phyla reflecting major functional capabilities".Int J Syst Evol Microbiol.70 (11):5972–6016.doi:10.1099/ijsem.0.004213.PMID 33151140.
  2. ^Thomas SH, Wagner RD, Arakaki AK, Skolnick J, Kirby JR, Shimkets LJ, Sanford RA, Löffler FE (May 2008)."The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria".PLOS ONE.3 (5) e2103.Bibcode:2008PLoSO...3.2103T.doi:10.1371/journal.pone.0002103.PMC 2330069.PMID 18461135.
  3. ^Subramanian, S.; Sharma, G. (19 August 2015) [Submitted on 15 August 2015]."Vulgatibacter incomptus strain DSM 27710, complete genome".Nucleotide. National Library of Medicine, National Center for Biotechnology Information. GenBank ID CP012332.1. Retrieved8 October 2024.
  4. ^Shilpee Pal, Gaurav Sharma & Srikrishna Subramanian (2021-09-13)."Complete genome sequence and identification of polyunsaturated fatty acid biosynthesis genes of the myxobacterium Minicystis rosea DSM 24000T".BMC Genomics.22 (1): 655.doi:10.1186/s12864-021-07955-x.PMC 8436480.PMID 34511070.
  5. ^Schneiker S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, et al. (November 2007)."Complete genome sequence of the myxobacterium, Sorangium cellulosum".Nat. Biotechnol.25 (11):1281–9.doi:10.1038/nbt1354.PMID 17965706.
  6. ^Land M, Hauser L, Jun SR, Nookaew I, Leuze MR, Ahn TH, Karpinets T, Lund O, Kora G, Wassenaar T, Poudel S, Ussery DW (March 2015)."Insights from 20 years of bacterial genome sequencing".Funct. Integr. Genomics.15 (2):141–61.doi:10.1007/s10142-015-0433-4.PMC 4361730.PMID 25722247.
  7. ^Mauriello EM, Mignot T, Yang Z, Zusman DR (June 2010)."Gliding motility revisited: how do the myxobacteria move without flagella?".Microbiol. Mol. Biol. Rev.74 (2):229–49.doi:10.1128/MMBR.00043-09.PMC 2884410.PMID 20508248.
  8. ^Reichenbach H (September 2001)."Myxobacteria, producers of novel bioactive substances".J. Ind. Microbiol. Biotechnol.27 (3):149–56.doi:10.1038/sj.jim.7000025.PMID 11780785.S2CID 34964313.
  9. ^abIslam ST, Vergara Alvarez I, Saïdi F, Guiseppi A, Vinogradov E, Sharma G, et al. (June 2020)."Modulation of bacterial multicellularity via spatio-specific polysaccharide secretion".PLOS Biology.18 (6) e3000728.doi:10.1371/journal.pbio.3000728.PMC 7310880.PMID 32516311.
  10. ^Islam ST, Vergara Alvarez I, Saïdi F, Guiseppi A, Vinogradov E, Sharma G, et al. (June 2020)."Modulation of bacterial multicellularity via spatio-specific polysaccharide secretion".PLOS Biology.18 (6) e3000728.doi:10.1371/journal.pbio.3000728.PMC 7310880.PMID 32516311.
  11. ^Kiskowski MA, Jiang Y, Alber MS (December 2004). "Role of streams in myxobacteria aggregate formation".Phys Biol.1 (3–4):173–83.Bibcode:2004PhBio...1..173K.doi:10.1088/1478-3967/1/3/005.PMID 16204837.S2CID 18846289.
  12. ^Sozinova O, Jiang Y, Kaiser D, Alber M (August 2005)."A three-dimensional model of myxobacterial aggregation by contact-mediated interactions".Proc. Natl. Acad. Sci. U.S.A.102 (32):11308–12.Bibcode:2005PNAS..10211308S.doi:10.1073/pnas.0504259102.PMC 1183571.PMID 16061806.
  13. ^Yu YT, Yuan X, Velicer GJ (May 2010)."Adaptive evolution of an sRNA that controls Myxococcus development".Science.328 (5981): 993.Bibcode:2010Sci...328..993Y.doi:10.1126/science.1187200.PMC 3027070.PMID 20489016.
  14. ^Fiegna F, Yu YT, Kadam SV, Velicer GJ (May 2006). "Evolution of an obligate social cheater to a superior cooperator".Nature.441 (7091):310–4.Bibcode:2006Natur.441..310F.doi:10.1038/nature04677.PMID 16710413.S2CID 4371886.
  15. ^Thaxter R (1892)."On the Myxobacteriaceæ, a New Order of Schizomycetes".Botanical Gazette.17 (12):389–406.doi:10.1086/326866.ISSN 0006-8071.
  16. ^Hoshino, Y.; Gaucher, E.A. (2021)."Evolution of bacterial steroid biosynthesis and its impact on eukaryogenesis".PNAS.118 (25) e2101276118.doi:10.1073/pnas.2101276118.ISSN 0027-8424.PMC 8237579.PMID 34131078.
  17. ^"FDA Approval for Ixabepilone".National Cancer Institute.
  18. ^Sasse F, Steinmetz H, Höfle G, Reichenbach H (January 1995)."Gephyronic acid, a novel inhibitor of eukaryotic protein synthesis from Archangium gephyra (myxobacteria). Production, isolation, physico-chemical and biological properties, and mechanism of action".J. Antibiot.48 (1):21–5.doi:10.7164/antibiotics.48.21.PMID 7868385.
  19. ^J.P. Euzéby."Deltaproteobacteria".List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved2022-09-09.
  20. ^Sayers; et al."Deltaproteobacteria".National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved2022-09-09.
  21. ^"The LTP". Retrieved10 December 2024.
  22. ^"LTP_all tree in newick format". Retrieved10 December 2024.
  23. ^"LTP_10_2024 Release Notes"(PDF). Retrieved10 December 2024.
  24. ^"GTDB release 09-RS220".Genome Taxonomy Database. Retrieved10 May 2024.
  25. ^"bac120_r220.sp_labels".Genome Taxonomy Database. Retrieved10 May 2024.
  26. ^"Taxon History".Genome Taxonomy Database. Retrieved10 May 2024.

External links

[edit]
Prokaryotes:Bacteria classification
Candidate Phyla
Radiation
"Synergistetes"
"Thermocalda"
"Cyanoprokaryota"
"Firmicutes"
  • Bacillota
  • Bacillota A
    • "Clostridiia"
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    • Thermosediminibacteria
  • Bacillota D
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  • Bacillota G
    • "Hydrogenisporia"
    • Limnochordia
  • "Desulfotomaculota"
    • "Carboxydocellia"
    • "Carboxydothermia"
    • "Dehalobacteriia"
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    • "Moorellia"
    • Peptococcia
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  • "Halanaerobiaeota"
  • "Selenobacteria"
"Sphingobacteria"
"Planctobacteria"
"Proteobacteria"
Incertae sedis
Incertae sedis
GTDB 09-RS220;LTP_10_2024
Myxococcales
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