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Molar absorption coefficient

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(Redirected fromMolar absorptivity)
Measure of how strongly a chemical species absorbs a given wavelength of light

Inchemistry, themolar absorption coefficient ormolar attenuation coefficient (ε)[1] is a measurement of how strongly achemical species absorbs, and therebyattenuates, light at a givenwavelength. It is anintrinsic property of the species. TheSI unit of molar absorption coefficient is the square metre permole (m2/mol), but in practice, quantities are usually expressed in terms ofM−1⋅cm−1 or L⋅mol−1⋅cm−1 (the latter two units are both equal to0.1 m2/mol). In older literature, the cm2/mol is sometimes used; 1 M−1⋅cm−1 equals 1000 cm2/mol. The molar absorption coefficient is also known as themolar extinction coefficient andmolar absorptivity, but the use of these alternative terms has been discouraged by theIUPAC.[2][3]

Beer–Lambert law

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Theabsorbance of a material that has only one absorbing species also depends on the pathlength and the concentration of the species, according to theBeer–Lambert law

A=εc,{\displaystyle A=\varepsilon c\ell ,}

where

  • ε is themolar absorption coefficient of that material;
  • c is themolar concentration of those species;
  • is the path length.

Different disciplines have different conventions as to whetherabsorbance is decadic (10-based) or Napierian (e-based), i.e., defined with respect to the transmission viacommon logarithm (log10) or anatural logarithm (ln). The molar absorption coefficient is usually decadic.[1][4] When ambiguity exists, it is important to indicate which one applies.

When there areN absorbing species in a solution, the overall absorbance is the sum of the absorbances for each individual speciesi:

A=i=1NAi=i=1Nεici.{\displaystyle A=\sum _{i=1}^{N}A_{i}=\ell \sum _{i=1}^{N}\varepsilon _{i}c_{i}.}

The composition of a mixture ofN absorbing species can be found by measuring the absorbance atNwavelengths (the values of the molar absorption coefficient for each species at these wavelengths must also be known). The wavelengths chosen are usually the wavelengths of maximum absorption (absorbance maxima) for the individual species. None of the wavelengths may be anisosbestic point for a pair of species. The set of the followingsimultaneous equations can be solved to find the concentrations of each absorbing species:

{A(λ1)=i=1Nεi(λ1)ci,A(λN)=i=1Nεi(λN)ci.{\displaystyle {\begin{cases}A(\lambda _{1})=\ell \sum _{i=1}^{N}\varepsilon _{i}(\lambda _{1})c_{i},\\\ldots \\A(\lambda _{N})=\ell \sum _{i=1}^{N}\varepsilon _{i}(\lambda _{N})c_{i}.\\\end{cases}}}

The molar absorption coefficient (in units of M−1cm−1) is directly related to theattenuation cross section (in units of cm2) via theAvogadro constantNA:[5]

σ=ln(10)103NAε3.82353216×1021ε.{\displaystyle \sigma =\ln(10){\frac {10^{3}}{N_{\text{A}}}}\varepsilon \approx 3.82353216\times 10^{-21}\,\varepsilon .}

Mass absorption coefficient

[edit]

Themass absorption coefficient is equal to the molar absorption coefficient divided by themolar mass of the absorbing species.

εm =εM

where

  • εm = Mass absorption coefficient
  • ε = Molar absorption coefficient
  • M = Molar mass of the absorbing species

Proteins

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Inbiochemistry, the molar absorption coefficient of aprotein at280 nm depends almost exclusively on the number of aromatic residues, particularlytryptophan, and can be predicted from the sequence ofamino acids.[6] Similarly, the molar absorption coefficient ofnucleic acids at260 nm can be predicted given the nucleotide sequence.

If the molar absorption coefficient is known, it can be used to determine the concentration of a protein in solution.

References

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  1. ^ab"Chapter 11 Section 2 - Terms and symbols used in photochemistry and in light scattering"(PDF).Compendium on Analytical Nomenclature (Orange Book). IUPAC. 2002. p. 28.
  2. ^IUPAC,Compendium of Chemical Terminology, 2nd ed. (the "Gold Book") (1997). Online corrected version: (2006–) "Extinction".doi:10.1351/goldbook.E02293
  3. ^IUPAC,Compendium of Chemical Terminology, 2nd ed. (the "Gold Book") (1997). Online corrected version: (2006–) "Absorptivity".doi:10.1351/goldbook.A00044
  4. ^"Molecular Spectroscopy"(PDF).Compendium on Analytical Nomenclature. IUPAC. 2002."Measuring techniques"(PDF).Compendium on Analytical Nomenclature. IUPAC. 2002.
  5. ^Lakowicz, J. R. (2006).Principles of Fluorescence Spectroscopy (3rd ed.). New York: Springer. p. 59.ISBN 9780387312781.
  6. ^Gill, S. C.; von Hippel, P. H. (1989). "Calculation of protein extinction coefficients from amino acid sequence data".Analytical Biochemistry.182 (2):319–326.doi:10.1016/0003-2697(89)90602-7.PMID 2610349.

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