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Methionine

From Wikipedia, the free encyclopedia
Sulfur-containing amino acid
Methionine
Chemical structure of methionine
Chemical structure of methionine
Skeletal formula of the canonical form of methionine
Names
IUPAC name
Methionine
Systematic IUPAC name
2-Amino-4-(methylsulfanyl)butanoic acid
Other names
2-amino-4-(methylthio)butanoic acid
Amino-γ-methylthiobutyric acid
Identifiers
3D model (JSmol)
AbbreviationsMet, M
ChEBI
ChEMBL
ChemSpider
DrugBank
ECHA InfoCard100.000.393Edit this at Wikidata
EC Number
  • L: 200-432-1
KEGG
UNII
  • InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1 checkY
    Key: FFEARJCKVFRZRR-BYPYZUCNSA-N checkY
  • D/L: Key: FFEARJCKVFRZRR-UHFFFAOYSA-N
  • D: Key: FFEARJCKVFRZRR-SCSAIBSYSA-N
  • L: CSCC[C@H](N)C(=O)O
  • LZwitterion: CSCC[C@H]([NH3+])C(=O)[O-]
Properties[2]
C5H11NO2S
Molar mass149.21 g·mol−1
AppearanceWhite crystalline powder
Density1.340 g/cm3
Melting point281 °C (538 °F; 554 K) decomposes
Soluble
Acidity (pKa)2.28 (carboxyl), 9.21 (amino)[1]
Pharmacology
V03AB26 (WHO) QA05BA90 (WHO),QG04BA90 (WHO)
Supplementary data page
Methionine (data page)
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
Chemical compound
Methionine ball and stick model spinning

Methionine (symbolMet orM)[3] (/mɪˈθənn/)[4] is anessential amino acid in humans. Compared to other amino acids, methionine has particularly decisivebiosynthetic roles. It is the precursor to the amino acidcysteine and the pervasivemethylation agentrSAM. Methionine is required for protein synthesis, which is initiated byN-formylmethionine-sRNA.

Methionine was first isolated in 1921 byJohn Howard Mueller.[5] It isencoded by thecodon AUG. It was named by Satoru Odake in 1925, as an abbreviation of its structural description 2-amino-4-(methylthio)butanoic acid.[6]

Biochemical details

[edit]

Methionine (abbreviated asMet orM; encoded by the codon AUG) is an α-amino acid that is used in thebiosynthesis ofproteins. It contains acarboxyl group (which is in the deprotonated −COO form under biologicalpH conditions), anamino group (which is in theprotonated−NH+
3
form under biological pH conditions) located in α-position with respect to the carboxyl group, and anS-methylthioether side chain, classifying it as anonpolar,aliphatic amino acid.[citation needed]

In nuclear genes ofeukaryotes and inArchaea, methionine is coded for by thestart codon, meaning it indicates the start of thecoding region and is the first amino acid produced in a nascentpolypeptide duringmRNAtranslation.[7]

A proteinogenic amino acid

[edit]

Cysteine and methionine are the twosulfur-containingproteinogenic amino acids. Excluding the few exceptions where methionine may act as aredox sensor (e.g.,methionine sulfoxide[8]), methionine residues do not have a catalytic role.[9] This is in contrast to cysteine residues, where the thiol group has a catalytic role in many proteins.[9] The thioether within methionine does however have a minor structural role due to the stability effect ofS/π interactions between the side chain sulfur atom and aromatic amino acids in one-third of all known protein structures.[9] This lack of a strong role is reflected in experiments where little effect is seen in proteins where methionine is replaced bynorleucine, a straight hydrocarbon sidechain amino acid which lacks the thioether.[10]It has been conjectured that norleucine was present in early versions of the genetic code, but methionine intruded into the final version of the genetic code due to its role in the cofactorS-adenosylmethionine (rSAM).[11] This situation is not unique and may have occurred withornithine andarginine.[12]

Encoding

[edit]

Methionine is one of only two amino acids encoded by a singlecodon (AUG) in the standardgenetic code (tryptophan, encoded by UGG, is the other). In reflection to the evolutionary origin of its codon, the other AUN codons encodeisoleucine, which is also a hydrophobic amino acid. In the mitochondrial genome of several organisms, includingmetazoa andyeast, the codon AUA also encodes for methionine. In the standard genetic code AUA codes for isoleucine and the respective tRNA (ileX inEscherichia coli) uses the unusual baselysidine (bacteria) oragmatidine (archaea) to discriminate against AUG.[13][14]

The methionine codon AUG is also the most common start codon. A "Start" codon is message for aribosome that signals the initiation of proteintranslation from mRNA when the AUG codon is in aKozak consensus sequence. As a consequence, methionine is often incorporated into theN-terminal position ofproteins ineukaryotes andarchaea during translation, although it can be removed bypost-translational modification. Inbacteria, the derivativeN-formylmethionine is used as the initial amino acid.[citation needed]

Derivatives

[edit]

S-Adenosylmethionine

[edit]
S-Adenosylmethionine is a cofactor derived from methionine.
Main article:S-Adenosylmethionine

The methionine-derivativeS-adenosylmethionine (rSAM) is acofactor that serves mainly as amethyl donor. rSAM is composed of an adenosyl molecule (via 5′ carbon) attached to the sulfur of methionine. It is asulfonium cation that releases a methyl radical upon reduction.[15]

Biosynthesis

[edit]
Methionine biosynthesis

As an essential amino acid, methionine is not synthesizedde novo in humans and other animals, which must ingest methionine or methionine-containing proteins. In plants and microorganisms, methionine biosynthesis belongs to theaspartate family, along with threonine andlysine (viadiaminopimelate, but not viaα-aminoadipate). The main backbone is derived fromaspartic acid, while the sulfur may come fromcysteine,methanethiol, orhydrogen sulfide.[9]

  • First, aspartic acid is converted via β-aspartyl semialdehyde intohomoserine by two reduction steps of the terminal carboxyl group (homoserine has therefore a γ-hydroxyl, hence thehomo- series). The intermediate aspartate semialdehyde is the branching point with the lysine biosynthetic pathway, where it is insteadcondensed with pyruvate. Homoserine is the branching point with the threonine pathway, where instead it is isomerised after activating the terminal hydroxyl with phosphate (also used for methionine biosynthesis in plants).[9]
  • Homoserine is then activated with a phosphate, succinyl or an acetyl group on the hydroxyl.
    • In plants and possibly in some bacteria,[9] phosphate is used. This step is shared with threonine biosynthesis.[9]
    • In most organisms, an acetyl group is used to activate the homoserine. This can be catalysed in bacteria by an enzyme encoded bymetX ormetA (not homologues).[9]
    • Inenterobacteria and a limited number of other organisms, succinate is used. The enzyme that catalyses the reaction is MetA and the specificity for acetyl-CoA and succinyl-CoA is dictated by a single residue.[9] The physiological basis for the preference of acetyl-CoA or succinyl-CoA is unknown, but such alternative routes are present in some other pathways (e.g. lysine biosynthesis and arginine biosynthesis).
  • The hydroxyl activating group is then replaced with cysteine, methanethiol, or hydrogen sulfide. A replacement reaction is technically a γ-elimination followed by a variant of aMichael addition. All the enzymes involved are homologues and members of theCys/Met metabolism PLP-dependent enzyme family, which is a subset of the PLP-dependent fold type I clade. They utilise the cofactor PLP (pyridoxal phosphate), which functions by stabilising carbanion intermediates.[9]
    • If it reacts with cysteine, it producescystathionine, which is cleaved to yieldhomocysteine. The enzymes involved arecystathionine-γ-synthase (encoded bymetB in bacteria) andcystathionine-β-lyase (metC). Cystathionine is bound differently in the two enzymes allowing β or γ reactions to occur.[9]
    • If it reacts with free hydrogen sulfide, it produces homocysteine. This is catalysed byO-acetylhomoserine aminocarboxypropyltransferase (formerly known asO-acetylhomoserine (thiol)-lyase. It is encoded by eithermetY ormetZ in bacteria.[9]
    • If it reacts with methanethiol, it produces methionine directly. Methanethiol is a byproduct of catabolic pathway of certain compounds, therefore this route is more uncommon.[9]
  • If homocysteine is produced, the thiol group is methylated, yielding methionine. Twomethionine synthases are known; one iscobalamin (vitamin B12) dependent and one is independent.[9]

The pathway using cysteine is called the "transsulfuration pathway", while the pathway using hydrogen sulfide (or methanethiol) is called "direct-sulfurylation pathway".

Cysteine is similarly produced, namely it can be made from an activated serine and either from homocysteine ("reverse transsulfurylation route") or from hydrogen sulfide ("direct sulfurylation route"); the activated serine is generallyO-acetylserine (via CysK or CysM inE. coli), but inAeropyrum pernix and some other archaeaO-phosphoserine is used.[16] CysK and CysM are homologues, but belong to the PLP fold type III clade.[citation needed]

Transsulfurylation pathway

[edit]
Main article:Transsulfuration pathway

Enzymes involved in theE. coli transsulfurylation route of methionine biosynthesis:[citation needed]

  1. Aspartokinase
  2. Aspartate-semialdehyde dehydrogenase
  3. Homoserine dehydrogenase
  4. HomoserineO-transsuccinylase
  5. Cystathionine-γ-synthase
  6. Cystathionine-β-lyase
  7. Methionine synthase (in mammals, this step is performed byhomocysteine methyltransferase orbetaine—homocysteineS-methyltransferase.)

Other biochemical pathways

[edit]
Fates of methionine

Although mammals cannot synthesize methionine, they can still use it in a variety of biochemical pathways:

Catabolism

[edit]

Methionine is converted toS-adenosylmethionine (rSAM) by (1)methionine adenosyltransferase.[citation needed]

rSAM serves as a methyl donor in many (2)methyltransferase reactions, and is converted toS-adenosylhomocysteine (SAH).[citation needed]

(3)Adenosylhomocysteinasecysteine.

Regeneration

[edit]

Methionine can be regenerated from homocysteine via (4)methionine synthase in a reaction that requiresvitamin B12 as acofactor.[citation needed]

Homocysteine can also be remethylated usingglycine betaine (N,N,N-trimethylglycine, TMG) to methionine via the enzymebetaine-homocysteine methyltransferase (E.C.2.1.1.5, BHMT). BHMT makes up to 1.5% of all the soluble protein of the liver, and recent evidence suggests that it may have a greater influence on methionine and homocysteine homeostasis than methionine synthase.[citation needed]

Reverse-transulfurylation pathway: conversion to cysteine

[edit]

Homocysteine can be converted to cysteine.

Metabolic diseases

[edit]

The degradation of methionine is impaired in the followingmetabolic diseases:[citation needed]

Chemical synthesis

[edit]

The industrial synthesis combinesacrolein,methanethiol, and cyanide, which affords thehydantoin.[17]Racemic methionine can also be synthesized from diethyl sodium phthalimidomalonate by alkylation with chloroethylmethylsulfide (ClCH2CH2SCH3) followed by hydrolysis and decarboxylation. Also see Methanol.[18]

Human nutrition

[edit]

There is inconclusive clinical evidence on methionine supplementation.[19] Dietary restriction of methionine can lead to bone-related disorders.[19]

Overconsumption of methionine, themethyl group donor inDNA methylation, is related to cancer growth in a number of studies.[20][21]

Requirements

[edit]

The Food and Nutrition Board of the U.S. Institute of Medicine set Recommended Dietary Allowances (RDAs) foressential amino acids in 2002. For methionine combined with cysteine, for adults 19 years and older, 19 mg/kg body weight/day.[22]

This translates to about 1.33 grams per day for a 70 kilogram individual.[citation needed]

Dietary sources

[edit]
Food sources of methionine[citation needed]
Foodg/100 g
Egg, white, dried, powder, glucose reduced3.204
Sesame seeds flour (low fat)1.656
Brazil nuts1.124
Cheese, Parmesan, shredded1.114
hemp seed, hulled0.933
Soy protein concentrate0.814
Chicken, broilers or fryers, roasted0.801
Fish, tuna, light, canned in water, drained solids0.755
Beef, cured, dried0.749
Bacon0.593
chia seeds0.588
Beef, ground, 95% lean meat / 5% fat, raw0.565
Pork, ground, 96% lean / 4% fat, raw0.564
Soybeans0.547
Wheat germ0.456
Egg, whole, cooked, hard-boiled0.392
Oat0.312
Peanuts0.309
Chickpea0.253
Corn, yellow0.197
Almonds0.151
Beans, pinto, cooked0.117
Lentils, cooked0.077
Rice, brown, medium-grain, cooked0.052

High levels of methionine can be found in eggs, meat, and fish; sesame seeds, Brazil nuts, and some other plant seeds; andcereal grains. Most fruits and vegetables contain very little. Mostlegumes, though protein dense, are low in methionine. Proteins without adequate methionine are not considered to becomplete proteins.[23] For that reason, racemic methionine is sometimes added as an ingredient topet foods.[24]

Health

[edit]

Loss of methionine has been linked to senile greying of hair. Its lack leads to a buildup ofhydrogen peroxide inhair follicles, a reduction intyrosinase effectiveness, and a gradual loss of hair color.[25] Methionine raises the intracellular concentration ofglutathione, thereby promoting antioxidant-mediated cell defense and redox regulation. It also protects cells againstdopamine induced nigral cell loss by binding oxidative metabolites.[26]

Methionine is an intermediate in the biosynthesis ofcysteine,carnitine,taurine,lecithin,phosphatidylcholine, and otherphospholipids. Improper conversion of methionine can lead toatherosclerosis[27] due to accumulation ofhomocysteine.

Other uses

[edit]

DL-Methionine is sometimes given as a supplement to dogs; It helps reduce the chances of kidney stones in dogs. Methionine is also known to increase the urinary excretion of quinidine by acidifying the urine. Aminoglycoside antibiotics used to treat urinary tract infections work best in alkaline conditions, and urinary acidification from using methionine can reduce its effectiveness. If a dog is on a diet that acidifies the urine, methionine should not be used.[28]

Methionine is allowed as a supplement to organic poultry feed under the US certified organic program.[29]

Methionine can be used as a nontoxic pesticide option againstgiant swallowtail caterpillars, which are a serious pest to orange crops.[30]

Restricting methionine intake

[edit]

More and more studies show that restricting methionine intake can increase the lifespan of some animals.[31][32]

In 2005, a study showed that restricting methionine intake without energy restriction in rodents increases their lifespan.[33]

See also

[edit]

References

[edit]
  1. ^Dawson RM, Elliott DC, Elliott WH, Jones KM (1959).Data for Biochemical Research. Oxford: Clarendon Press.
  2. ^Weast, Robert C., ed. (1981).CRC Handbook of Chemistry and Physics (62nd ed.). Boca Raton, Florida: CRC Press. p. C-374.ISBN 0-8493-0462-8..
  3. ^"Nomenclature and Symbolism for Amino Acids and Peptides". IUPAC-IUB Joint Commission on Biochemical Nomenclature. 1983. Archived fromthe original on 9 October 2008. Retrieved5 March 2018.
  4. ^"Methionine". Oxford University Press. Archived fromthe original on January 27, 2018.
  5. ^Pappenheimer AM (1987)."A Biographical Memoir of John Howard Mueller"(PDF). Washington D.C.: National Academy of Sciences.
  6. ^Odake, Satoru (1925)."On the Occurrence of a Sulphur-containing Amino acid in Yeast".Bulletin of the Agricultural Chemical Society of Japan.1 (8):87–89.doi:10.1271/bbb1924.1.87.ISSN 1881-1272.
  7. ^Guedes RL, Prosdocimi F, Fernandes GR, Moura LK, Ribeiro HA, Ortega JM (December 2011)."Amino acids biosynthesis and nitrogen assimilation pathways: a great genomic deletion during eukaryotes evolution".BMC Genomics.12 (Suppl 4) S2.doi:10.1186/1471-2164-12-S4-S2.PMC 3287585.PMID 22369087.
  8. ^Bigelow DJ, Squier TC (January 2005)."Redox modulation of cellular signaling and metabolism through reversible oxidation of methionine sensors in calcium regulatory proteins".Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (Submitted manuscript).1703 (2):121–134.doi:10.1016/j.bbapap.2004.09.012.PMID 15680220.
  9. ^abcdefghijklmnFerla MP, Patrick WM (August 2014)."Bacterial methionine biosynthesis".Microbiology.160 (Pt 8):1571–1584.doi:10.1099/mic.0.077826-0.PMID 24939187.
  10. ^Cirino PC, Tang Y, Takahashi K, Tirrell DA, Arnold FH (September 2003). "Global incorporation of norleucine in place of methionine in cytochrome P450 BM-3 heme domain increases peroxygenase activity".Biotechnology and Bioengineering.83 (6):729–734.doi:10.1002/bit.10718.PMID 12889037.S2CID 11380413.
  11. ^Alvarez-Carreño C, Becerra A, Lazcano A (October 2013). "Norvaline and norleucine may have been more abundant protein components during early stages of cell evolution".Origins of Life and Evolution of the Biosphere.43 (4–5):363–375.Bibcode:2013OLEB...43..363A.doi:10.1007/s11084-013-9344-3.PMID 24013929.S2CID 17224537.
  12. ^Jukes TH (August 1973). "Arginine as an evolutionary intruder into protein synthesis".Biochemical and Biophysical Research Communications.53 (3):709–714.doi:10.1016/0006-291x(73)90151-4.PMID 4731949.
  13. ^Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T, Suzuki T (April 2010). "Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea".Nature Chemical Biology.6 (4):277–282.doi:10.1038/nchembio.323.PMID 20139989.
  14. ^Muramatsu T, Nishikawa K, Nemoto F, Kuchino Y, Nishimura S, Miyazawa T, Yokoyama S (November 1988). "Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification".Nature.336 (6195):179–181.Bibcode:1988Natur.336..179M.doi:10.1038/336179a0.PMID 3054566.S2CID 4371485.
  15. ^Holliday GL, Akiva E, Meng EC, Brown SD, Calhoun S, Pieper U, Sali A, Booker SJ, Babbitt PC (2018). "Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain".Radical SAM Enzymes. Methods in Enzymology. Vol. 606. pp. 1–71.doi:10.1016/bs.mie.2018.06.004.ISBN 978-0-12-812794-0.PMC 6445391.PMID 30097089.
  16. ^Mino K, Ishikawa K (September 2003)."A novelO-phospho-L-serine sulfhydrylation reaction catalyzed byO-acetylserine sulfhydrylase fromAeropyrum pernix K1".FEBS Letters.551 (1–3):133–138.doi:10.1016/S0014-5793(03)00913-X.PMID 12965218.S2CID 28360765.
  17. ^Karlheinz Drauz; Ian Grayson; Axel Kleemann; Hans-Peter Krimmer; Wolfgang Leuchtenberger; Christoph Weckbecker (2006).Ullmann's Encyclopedia of Industrial Chemistry. Weinheim: Wiley-VCH.doi:10.1002/14356007.a02_057.pub2.ISBN 978-3-527-30673-2.
  18. ^Barger G, Weichselbaum TE (1934)."dl-Methionine".Organic Syntheses.14: 58;Collected Volumes, vol. 2, p. 384.
  19. ^abNavik U, Sheth VG, Khurana A, Jawalekar SS, Allawadhi P, Gaddam RR, Bhatti JS, Tikoo K. (2021). "Methionine as a double-edged sword in health and disease: Current perspective and future challenges".Ageing Res Rev.72 101500.doi:10.1016/j.arr.2021.101500.PMID 34700006.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  20. ^Cavuoto P, Fenech MF (2012). "A review of methionine dependency and the role of methionine restriction in cancer growth control and life-span extension".Cancer Treatment Reviews.38 (6):726–736.doi:10.1016/j.ctrv.2012.01.004.PMID 22342103.
  21. ^Cellarier E, Durando X, Vasson MP, Farges MC, Demiden A, Maurizis JC, Madelmont JC, Chollet P (2003). "Methionine dependency and cancer treatment".Cancer Treatment Reviews.29 (6):489–499.doi:10.1016/S0305-7372(03)00118-X.PMID 14585259.
  22. ^Institute of Medicine (2002)."Protein and Amino Acids".Dietary Reference Intakes for Energy, Carbohydrates, Fiber, Fat, Fatty Acids, Cholesterol, Protein, and Amino Acids. Washington, DC: The National Academies Press. pp. 589–768.doi:10.17226/10490.ISBN 978-0-309-08525-0.
  23. ^Finkelstein JD (May 1990). "Methionine metabolism in mammals".The Journal of Nutritional Biochemistry.1 (5):228–237.doi:10.1016/0955-2863(90)90070-2.PMID 15539209.S2CID 32264340.
  24. ^Palika L (1996).The Consumer's Guide to Dog Food: What's in Dog Food, Why It's There and How to Choose the Best Food for Your Dog. New York: Howell Book House.ISBN 978-0-87605-467-3.
  25. ^Wood JM, Decker H, Hartmann H, Chavan B, Rokos H, Spencer JD, et al. (July 2009)."Senile hair graying: H2O2-mediated oxidative stress affects human hair color by blunting methionine sulfoxide repair".FASEB Journal.23 (7):2065–75.arXiv:0706.4406.doi:10.1096/fj.08-125435.hdl:10454/6241.PMID 19237503.S2CID 16069417.
  26. ^Pinnen F, et al. (2009). "Codrugs linkingL-dopa and sulfur-containing antioxidants: new pharmacological tools against Parkinson's disease".Journal of Medicinal Chemistry.52 (2):559–63.doi:10.1021/jm801266x.PMID 19093882.
  27. ^Refsum H, Ueland PM, Nygård O, Vollset SE (1998). "Homocysteine and cardiovascular disease".Annual Review of Medicine.49 (1):31–62.doi:10.1146/annurev.med.49.1.31.PMID 9509248.
  28. ^Grimshaw, Jane (July 25, 2011)Methionine for Dogs uses and Side Effects. critters360.com
  29. ^"Rules and Regulations".Federal Register.76 (49):13501–13504. March 14, 2011.
  30. ^Lewis DS, Cuda JP, Stevens BR (December 2011)."A novel biorational pesticide: efficacy of methionine againstHeraclides (Papilio) cresphontes, a surrogate of the invasivePrinceps (Papilio) demoleus (Lepidoptera: Papilionidae)".Journal of Economic Entomology.104 (6):1986–1990.doi:10.1603/ec11132.PMID 22299361.S2CID 45255198.
  31. ^Bárcena C, Quirós PM, Durand S, Mayoral P, Rodríguez F, Caravia XM, Mariño G, Garabaya C, Fernández-García MT, Kroemer G, Freije JMP, López-Otín C (2018)."Methionine Restriction Extends Lifespan in Progeroid Mice and Alters Lipid and Bile Acid Metabolism".PubMed, NCBI.24 (9):2392–2403.doi:10.1016/j.celrep.2018.07.089.PMC 6130051.PMID 30157432.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  32. ^Sun L, Sadighi Akha AA, Miller RA, Harper JM. (2009)."Life-span extension in mice by preweaning food restriction and by methionine restriction in middle age".PubMed, NCBI.64A (7):711–722.doi:10.1093/gerona/glp051.PMC 2691799.PMID 19414512.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  33. ^Richard A. Miller, Gretchen Buehner, Yayi Chang, James M. Harper, Robert Sigler, Michael Smith-Wheelock (2005)."Methionine-deficient diet extends mouse lifespan, slows immune and lens aging, alters glucose, T4, IGF-I and insulin levels, and increases hepatocyte MIF levels and stress resistance".Wiley Online Library.4 (3):119–125.doi:10.1111/j.1474-9726.2005.00152.x.PMC 7159399.PMID 15924568.{{cite journal}}: CS1 maint: multiple names: authors list (link)

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