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Liprin-alpha-1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

PPFIA1
Available structures
PDBHuman UniProt search:PDBeRCSB
List of PDB id codes

1N7F

Identifiers
AliasesPPFIA1, LIP.1, LIP1, LIPRIN, PTPRF interacting protein alpha 1
External IDsOMIM:611054;MGI:1924750;HomoloGene:20802;GeneCards:PPFIA1;OMA:PPFIA1 - orthologs
Gene location (Human)
Chromosome 11 (human)
Chr.Chromosome 11 (human)[1]
Chromosome 11 (human)
Genomic location for PPFIA1
Genomic location for PPFIA1
Band11q13.3Start70,270,690bp[1]
End70,385,312bp[1]
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)[2]
Chromosome 7 (mouse)
Genomic location for PPFIA1
Genomic location for PPFIA1
Band7|7 F5Start144,030,495bp[2]
End144,107,466bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sural nerve

  • oocyte

  • secondary oocyte

  • buccal mucosa cell

  • sperm

  • Achilles tendon

  • endothelial cell

  • Epithelium of choroid plexus

  • tibia

  • visceral pleura
Top expressed in
  • zygote

  • secondary oocyte

  • genital tubercle

  • tail of embryo

  • primary oocyte

  • ventricular zone

  • superior cervical ganglion

  • lip

  • esophagus

  • hair follicle
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8500

233977

Ensembl

ENSG00000131626
ENSG00000288198

ENSMUSG00000037519

UniProt

Q13136

n/a

RefSeq (mRNA)

NM_003626
NM_177423
NM_001378006

NM_001033319
NM_001195086

RefSeq (protein)

NP_003617
NP_803172
NP_001364935

n/a

Location (UCSC)Chr 11: 70.27 – 70.39 MbChr 7: 144.03 – 144.11 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Liprin-alpha-1 is aprotein that in humans is encoded by thePPFIA1gene.[5][6][7]

Function

[edit]

The protein encoded by this gene is a member of the LARprotein tyrosine phosphatase-interacting protein (liprin) family. Liprins interact with members of LAR family of transmembrane protein tyrosine phosphatases, which are known to be important foraxon guidance andmammary gland development. This protein binds to the intracellular membrane-distal phosphatase domain of tyrosine phosphatase LAR, and appears to localize LAR to cell focal adhesions. This interaction may regulate the disassembly of focal adhesion and thus help orchestrate cell-matrix interactions. Alternatively spliced transcript variants encoding distinctisoforms have been described.[7]

Interactions

[edit]

Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 has been shown tointeract with:

References

[edit]
  1. ^abcENSG00000288198 GRCh38: Ensembl release 89: ENSG00000131626, ENSG00000288198Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000037519Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abSerra-Pagès C, Kedersha NL, Fazikas L, Medley Q, Debant A, Streuli M (Aug 1995)."The LAR transmembrane protein tyrosine phosphatase and a coiled-coil LAR-interacting protein co-localize at focal adhesions".EMBO J.14 (12):2827–2838.doi:10.1002/j.1460-2075.1995.tb07282.x.PMC 398401.PMID 7796809.
  6. ^abcdSerra-Pagès C, Medley QG, Tang M, Hart A, Streuli M (Jul 1998)."Liprins, a family of LAR transmembrane protein-tyrosine phosphatase-interacting proteins".J Biol Chem.273 (25):15611–15620.doi:10.1074/jbc.273.25.15611.PMID 9624153.
  7. ^ab"Entrez Gene: PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1".
  8. ^abcKo J, Na M, Kim S, Lee JR, Kim E (Oct 2003)."Interaction of the ERC family of RIM-binding proteins with the liprin-alpha family of multidomain proteins".J. Biol. Chem.278 (43):42377–85.doi:10.1074/jbc.M307561200.PMID 12923177.
  9. ^abKo J, Kim S, Valtschanoff JG, Shin H, Lee JR, Sheng M, Premont RT, Weinberg RJ, Kim E (Mar 2003)."Interaction between liprin-alpha and GIT1 is required for AMPA receptor targeting".J. Neurosci.23 (5):1667–77.doi:10.1523/JNEUROSCI.23-05-01667.2003.PMC 6741975.PMID 12629171.
  10. ^Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J,Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (Oct 2005). "Towards a proteome-scale map of the human protein-protein interaction network".Nature.437 (7062):1173–8.Bibcode:2005Natur.437.1173R.doi:10.1038/nature04209.PMID 16189514.S2CID 4427026.
  11. ^abcPulido R, Serra-Pagès C, Tang M, Streuli M (Dec 1995)."The LAR/PTP delta/PTP sigma subfamily of transmembrane protein-tyrosine-phosphatases: multiple human LAR, PTP delta, and PTP sigma isoforms are expressed in a tissue-specific manner and associate with the LAR-interacting protein LIP.1".Proc. Natl. Acad. Sci. U.S.A.92 (25):11686–90.Bibcode:1995PNAS...9211686P.doi:10.1073/pnas.92.25.11686.PMC 40467.PMID 8524829.

Further reading

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External links

[edit]
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