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LITAF

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From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens

LITAF

Identifiers

Aliases

LITAF, PIG7, SIMPLE, TP53I7, lipopolysaccharide induced TNF factor

External IDs

OMIM:603795;MGI:1929512;HomoloGene:37974;GeneCards:LITAF;OMA:LITAF - orthologs

Gene location (Human)

Chr.	Chromosome 16 (human)^[1]

Band	16p13.13	Start	11,547,722bp^[1]
Band	16p13.13	End	11,636,381bp^[1]

Gene location (Mouse)

Chr.	Chromosome 16 (mouse)^[2]

Band	16\|16 A1	Start	10,777,139bp^[2]
Band	16\|16 A1	End	10,884,021bp^[2]

RNA expression pattern

Bgee

Human

Mouse (ortholog)

Top expressed in

blood

palpebral conjunctiva

periodontal fiber

visceral pleura

mucosa of urinary bladder

appendix

tibia

granulocyte

canal of the cervix

gallbladder

Top expressed in

granulocyte

endothelial cell of lymphatic vessel

stroma of bone marrow

blood

decidua

vestibular sensory epithelium

left colon

gastrula

vestibular membrane of cochlear duct

skin of external ear

More reference expression data

BioGPS


More reference expression data

Gene ontology
Molecular function	signal transducer activity protein binding WW domain binding zinc ion binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA binding metal ion binding
Cellular component	membrane nucleoplasm lysosomal membrane lysosome cytosol cytoplasmic side of plasma membrane cytoplasmic side of early endosome membrane cytoplasmic side of late endosome membrane cytoplasmic side of lysosomal membrane Golgi membrane nucleus cytoplasm endosome Golgi apparatus plasma membrane endosome membrane early endosome membrane late endosome membrane intracellular membrane-bounded organelle integral component of membrane
Biological process	regulation of transcription, DNA-templated regulation of transcription by RNA polymerase II ageing transcription, DNA-templated regulation of cytokine production response to lipopolysaccharide positive regulation of I-kappaB kinase/NF-kappaB signaling cellular response to lipopolysaccharide signal transduction transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II
Sources:Amigo /QuickGO

Orthologs

Species

Human

Mouse

Entrez


9516


56722

Ensembl


ENSG00000189067


ENSMUSG00000022500

UniProt


Q99732


Q9JLJ0

RefSeq (mRNA)


NM_001136472 NM_001136473 NM_004862


NM_019980

RefSeq (protein)


NP_001129944 NP_001129945 NP_004853


NP_064364

Location (UCSC)

Chr 16: 11.55 – 11.64 Mb

Chr 16: 10.78 – 10.88 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

Lipopolysaccharide-induced tumor necrosis factor-alpha factor is aprotein that in humans is encoded by theLITAFgene.^[5]^[6]^[7]

It is associated withCharcot–Marie–Tooth disease 1C.

References

[edit]

^^a ^b ^cGRCh38: Ensembl release 89: ENSG00000189067 –Ensembl, May 2017
^^a ^b ^cGRCm38: Ensembl release 89: ENSMUSG00000022500 –Ensembl, May 2017
^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
^Polyak K, Xia Y, Zweier JL, Kinzler KW, Vogelstein B (Sep 1997). "A model for p53-induced apoptosis".Nature.389 (6648):300–5.Bibcode:1997Natur.389..300P.doi:10.1038/38525.PMID 9305847.S2CID 4429638.
^Myokai F, Takashiba S, Lebo R, Amar S (May 1999)."A novel lipopolysaccharide-induced transcription factor regulating tumor necrosis factor alpha gene expression: molecular cloning, sequencing, characterization, and chromosomal assignment".Proc Natl Acad Sci U S A.96 (8):4518–23.Bibcode:1999PNAS...96.4518M.doi:10.1073/pnas.96.8.4518.PMC 16364.PMID 10200294.
^"Entrez Gene: LITAF lipopolysaccharide-induced TNF factor".

External links

[edit]

GeneReviews/NCBI/NIH/UW entry on Charcot-Marie-Tooth Neuropathy Type 1

Jolliffe CN, Harvey KF, Haines BP, et al. (2001)."Identification of multiple proteins expressed in murine embryos as binding partners for the WW domains of the ubiquitin-protein ligase Nedd4".Biochem. J.351 (3):557–65.doi:10.1042/0264-6021:3510557.PMC 1221394.PMID 11042109.
Moriwaki Y, Begum NA, Kobayashi M, et al. (2001)."Mycobacterium bovis Bacillus Calmette-Guerin and its cell wall complex induce a novel lysosomal membrane protein, SIMPLE, that bridges the missing link between lipopolysaccharide and p53-inducible gene, LITAF(PIG7), and estrogen-inducible gene, EET-1".J. Biol. Chem.276 (25):23065–76.doi:10.1074/jbc.M011660200.PMID 11274176.
Street VA, Goldy JD, Golden AS, et al. (2002)."Mapping of Charcot-Marie-Tooth disease type 1C to chromosome 16p identifies a novel locus for demyelinating neuropathies".Am. J. Hum. Genet.70 (1):244–50.doi:10.1086/337943.PMC 384893.PMID 11713717.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003)."Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences".Proc. Natl. Acad. Sci. U.S.A.99 (26):16899–903.Bibcode:2002PNAS...9916899M.doi:10.1073/pnas.242603899.PMC 139241.PMID 12477932.
Street VA, Bennett CL, Goldy JD, et al. (2003). "Mutation of a putative protein degradation gene LITAF/SIMPLE in Charcot-Marie-Tooth disease 1C".Neurology.60 (1):22–6.doi:10.1212/wnl.60.1.22.PMID 12525712.S2CID 7495837.
Matsuda A, Suzuki Y, Honda G, et al. (2003). "Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways".Oncogene.22 (21):3307–18.doi:10.1038/sj.onc.1206406.PMID 12761501.S2CID 38880905.
Street VA, Bennett CL, Bird TD, Chance PF (2004). "New gene for CMT".J. Peripher. Nerv. Syst.8 (4): 206.doi:10.1111/j.1085-9489.2003.03025.x.PMID 14641644.S2CID 12117063.
Ota T, Suzuki Y, Nishikawa T, et al. (2004)."Complete sequencing and characterization of 21,243 full-length human cDNAs".Nat. Genet.36 (1):40–5.doi:10.1038/ng1285.PMID 14702039.
Ludes-Meyers JH, Kil H, Bednarek AK, et al. (2004)."WWOX binds the specific proline-rich ligand PPXY: identification of candidate interacting proteins".Oncogene.23 (29):5049–55.doi:10.1038/sj.onc.1207680.PMC 4143251.PMID 15064722.
Bennett CL, Shirk AJ, Huynh HM, et al. (2004). "SIMPLE mutation in demyelinating neuropathy and distribution in sciatic nerve".Ann. Neurol.55 (5):713–20.doi:10.1002/ana.20094.PMID 15122712.S2CID 7719672.
Matsumura Y, Matsumura Y, Nishigori C, et al. (2004). "PIG7/LITAF gene mutation and overexpression of its gene product in extramammary Paget's disease".Int. J. Cancer.111 (2):218–23.doi:10.1002/ijc.20251.PMID 15197774.S2CID 27155753.
Gerhard DS, Wagner L, Feingold EA, et al. (2004)."The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)".Genome Res.14 (10B):2121–7.doi:10.1101/gr.2596504.PMC 528928.PMID 15489334.
Saifi GM, Szigeti K, Wiszniewski W, et al. (2006). "SIMPLE mutations in Charcot-Marie-Tooth disease and the potential role of its protein product in protein degradation".Hum. Mutat.25 (4):372–83.doi:10.1002/humu.20153.PMID 15776429.S2CID 20127440.
Meggouh F, de Visser M, Arts WF, et al. (2005). "Early onset neuropathy in a compound form of Charcot-Marie-Tooth disease".Ann. Neurol.57 (4):589–91.doi:10.1002/ana.20434.PMID 15786462.S2CID 32014135.
Tang X, Marciano DL, Leeman SE, Amar S (2005)."LPS induces the interaction of a transcription factor, LPS-induced TNF-alpha factor, and STAT6(B) with effects on multiple cytokines".Proc. Natl. Acad. Sci. U.S.A.102 (14):5132–7.Bibcode:2005PNAS..102.5132T.doi:10.1073/pnas.0501159102.PMC 555602.PMID 15793005.
Beauvais K, Furby A, Latour P (2006). "Clinical, electrophysiological and molecular genetic studies in a family with X-linked dominant Charcot-Marie-Tooth neuropathy presenting a novel mutation in GJB1 Promoter and a rare polymorphism in LITAF/SIMPLE".Neuromuscul. Disord.16 (1):14–8.doi:10.1016/j.nmd.2005.09.008.PMID 16373087.S2CID 32730191.
Latour P, Gonnaud PM, Ollagnon E, et al. (2006)."SIMPLE mutation analysis in dominant demyelinating Charcot-Marie-Tooth disease: three novel mutations".J. Peripher. Nerv. Syst.11 (2):148–55.doi:10.1111/j.1085-9489.2006.00080.x.PMID 16787513.S2CID 24702162.
Stucchi A, Reed K, O'Brien M, et al. (2007)."A new transcription factor that regulates TNF-alpha gene expression, LITAF, is increased in intestinal tissues from patients with CD and UC".Inflamm. Bowel Dis.12 (7):581–7.doi:10.1097/01.MIB.0000225338.14356.d5.PMID 16804395.S2CID 28836872.

Structures of thecell nucleus /nuclear protein

Envelope (membrane)/
nuclear lamina

Nucleolus

Other

Chromatin Dot (PML body) Paraspeckle
SMC protein:	Cohesin SMC1A SMC1B SMC3 Condensin NCAPD2 NCAPD3 NCAPG NCAPG2 NCAPH NCAPH2 SMC2 SMC4 DNA repair SMC5 SMC6
Transition nuclear protein:	TNP1 TNP2
Nuclear matrix (Nucleoskeleton) Nucleoplasm (Nucleosol)
LITAF
see alsotranscription factors and intracellular receptors

see alsonucleus diseases

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