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LGTN

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
EIF2D
Identifiers
AliasesEIF2D, HCA56, LGTN, eukaryotic translation initiation factor 2D
External IDsOMIM:613709;MGI:109342;HomoloGene:38244;GeneCards:EIF2D;OMA:EIF2D - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for EIF2D
Genomic location for EIF2D
Band1q32.1Start206,571,292bp[1]
End206,612,465bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for EIF2D
Genomic location for EIF2D
Band1 E4|1 56.9 cMStart131,080,918bp[2]
End131,115,395bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • left ovary

  • body of uterus

  • right ovary

  • right uterine tube

  • glutes

  • muscle of thigh

  • parotid gland

  • body of pancreas

  • muscle layer of sigmoid colon

  • canal of the cervix
Top expressed in
  • Paneth cell

  • fossa

  • condyle

  • hair follicle

  • internal carotid artery

  • lacrimal gland

  • primitive streak

  • external carotid artery

  • endothelial cell of lymphatic vessel

  • epiblast
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1939

16865

Ensembl

ENSG00000143486

ENSMUSG00000026427

UniProt

P41214
Q5SY38

Q61211

RefSeq (mRNA)

NM_001201478
NM_006893

NM_001136070
NM_010709

RefSeq (protein)

NP_001188407
NP_008824

NP_001129542
NP_034839

Location (UCSC)Chr 1: 206.57 – 206.61 MbChr 1: 131.08 – 131.12 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ligatin, otherwise known aseIF2D, is aprotein that in humans is encoded by theLGTNgene.[5][6] This protein is not a component of the heterotrimericeIF2 complex, but instead functions in different pathways ofeukaryotic translation.

Function

[edit]

This gene encodes a protein receptor that localizes phosphoglycoproteins withinendosomes and at the cell periphery. This trafficking receptor for phosphoglycoproteins may play a role inneuroplasticity by modulating cell-cell interactions, intracellular adhesion, and protein binding at membrane surfaces. Inhippocampal neurons, long-lasting down-regulation of ligation mRNA levels occurs via post-transcriptional RNA processing followingglutamate receptor activation. This protein contains singlePUA andSUI1 domains and these domains may function in RNA binding and translation initiation, respectively.[6]

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000143486Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000026427Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Jakoi ER, Brown AL, Ho YS, Snyderman R (June 1989). "Molecular cloning of the cDNA for ligatin".Journal of Cell Science. 93 ( Pt 2) (2):227–32.doi:10.1242/jcs.93.2.227.PMID 2482295.
  6. ^ab"Entrez Gene: LGTN ligatin".

Further reading

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