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KLF5

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
KLF5
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2EBT

Identifiers
AliasesKLF5, BTEB2, CKLF, IKLF, Kruppel-like factor 5 (intestinal), Kruppel like factor 5
External IDsOMIM:602903;MGI:1338056;HomoloGene:37520;GeneCards:KLF5;OMA:KLF5 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for KLF5
Genomic location for KLF5
Band13q22.1Start73,054,976bp[1]
End73,077,541bp[1]
Gene location (Mouse)
Chromosome 14 (mouse)
Chr.Chromosome 14 (mouse)[2]
Chromosome 14 (mouse)
Genomic location for KLF5
Genomic location for KLF5
Band14|14 E2.2Start99,536,127bp[2]
End99,552,472bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • epithelium of nasopharynx

  • gingival epithelium

  • human penis

  • mucosa of pharynx

  • amniotic fluid

  • mucosa of nose

  • mucosa of sigmoid colon

  • nipple

  • skin of abdomen

  • olfactory zone of nasal mucosa
Top expressed in
  • left colon

  • crypt of lieberkuhn of small intestine

  • gastrula

  • mucosa of urinary bladder

  • transitional epithelium of urinary bladder

  • migratory enteric neural crest cell

  • skin of external ear

  • conjunctival fornix

  • ileum

  • Paneth cell
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

688

12224

Ensembl

ENSG00000102554

ENSMUSG00000005148

UniProt

Q13887

Q9Z0Z7

RefSeq (mRNA)

NM_001730
NM_001286818

NM_009769

RefSeq (protein)

NP_001273747
NP_001721

NP_033899

Location (UCSC)Chr 13: 73.05 – 73.08 MbChr 14: 99.54 – 99.55 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Krueppel-like factor 5 is aprotein that in humans is encoded by theKLF5gene.[5][6]

Function

[edit]

This gene encodes a member of the Kruppel-like factor subfamily of zinc finger proteins. Since the protein localizes to the nucleus and binds the epidermal growth factor response element, it is thought to be atranscription factor.[6]

Interactions

[edit]

KLF5 has been shown tointeract withProtein SET.[7]

Clinical significance

[edit]

KLF5 expression has been linked to higher survival rates forlung cancer patients.[8]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000102554Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000005148Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Sogawa K, Imataka H, Yamasaki Y, Kusume H, Abe H, Fujii-Kuriyama Y (Apr 1993)."cDNA cloning and transcriptional properties of a novel GC box-binding protein, BTEB2".Nucleic Acids Research.21 (7):1527–32.doi:10.1093/nar/21.7.1527.PMC 309358.PMID 8479902.
  6. ^ab"Entrez Gene: KLF5 Kruppel-like factor 5 (intestinal)".
  7. ^Miyamoto S, Suzuki T, Muto S, Aizawa K, Kimura A, Mizuno Y, Nagino T, Imai Y, Adachi N, Horikoshi M, Nagai R (Dec 2003)."Positive and negative regulation of the cardiovascular transcription factor KLF5 by p300 and the oncogenic regulator SET through interaction and acetylation on the DNA-binding domain".Molecular and Cellular Biology.23 (23):8528–41.doi:10.1128/MCB.23.23.8528-8541.2003.PMC 262669.PMID 14612398.
  8. ^"Research update from the MCM team (May 2024)". World Community Grid. 13 May 2024. Retrieved21 May 2024.

Further reading

[edit]

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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