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KLF2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
KLF2
Identifiers
AliasesKLF2, LKLF, Kruppel-like factor 2, Kruppel like factor 2
External IDsOMIM:602016;MGI:1342772;HomoloGene:133978;GeneCards:KLF2;OMA:KLF2 - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)[1]
Chromosome 19 (human)
Genomic location for KLF2
Genomic location for KLF2
Band19p13.11Start16,324,826bp[1]
End16,328,685bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for KLF2
Genomic location for KLF2
Band8|8 B3.3Start73,072,877bp[2]
End73,075,500bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • urethra

  • vena cava

  • trachea

  • saphenous vein

  • gastric mucosa

  • granulocyte

  • nipple

  • pericardium

  • cardia

  • pylorus
Top expressed in
  • granulocyte

  • right lung

  • ankle joint

  • right lung lobe

  • mesenteric lymph nodes

  • spleen

  • subcutaneous adipose tissue

  • ankle

  • endocardial cushion

  • left lung
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10365

16598

Ensembl

ENSG00000127528

ENSMUSG00000055148

UniProt

Q9Y5W3

Q60843

RefSeq (mRNA)

NM_016270
NM_006075
NM_016198

NM_008452

RefSeq (protein)

NP_057354

NP_032478

Location (UCSC)Chr 19: 16.32 – 16.33 MbChr 8: 73.07 – 73.08 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Krüppel-like Factor 2 (KLF2), also known aslung Krüppel-like Factor (LKLF), is aprotein that in humans is encoded by theKLF2gene onchromosome 19.[5][6] It is in theKrüppel-like factor family ofzinc finger transcription factors, and it has been implicated in a variety of biochemical processes in the human body, includinglung development, embryonicerythropoiesis,epithelial integrity,T-cell viability, andadipogenesis.[7]

Discovery

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Erythroid Krüppel-like Factor (EKLF or KLF1) was the first Krüppel-like Factor discovered. It is vital for embryonic erythropoiesis in promoting the switch from fetalhemoglobin (Hemoglobin F) to adult hemoglobin (Hemoglobin A)gene expression by binding to highly conserved CACCC domains.[8]EKLFablation in mouse embryos produces a lethalanemicphenotype, causing death by embryonic day 14, and naturalmutations lead toβ+ thalassemia in humans.[9] However, expression ofembryonic hemoglobin and fetal hemoglobin genes is normal inEKLF-deficient mice, and since all genes on thehuman β-globin locus exhibit the CACCC elements, researchers began searching for other Krüppel-like factors.[10]

KLF2, initially called lung Krüppel-like Factor due to its high expression in the adult mouse lung, was first isolated in 1995 by using thezinc finger domain of EKLF as ahybridization probe.[11] Bytransactivationassay in mousefibroblasts, KLF2 was also noticed to bind to theβ-globingene promoter containing the CACCC sequence shown to be the binding site for EKLF, confirming KLF2 as a member of the Krüppel-like Factor family.[11] Since then, many other KLF proteins have been discovered.

Structure

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The main feature of the KLF family is the presence of three highly conservedCysteine2/Histidine2 zinc fingers of either 21 or 23amino acid residues in length, located at theC-terminus of the protein. These amino acid sequences eachchelate a singlezinc ion,coordinated between the two cysteine and two histidine residues. These zinc fingers are joined by a conserved seven-amino acid sequence;TGEKP(Y/F)X. The zinc fingers enable all KLF proteins to bind to CACCCgene promoters, so although they may complete varied functions (due to lack ofhomology away from the zinc fingers), they all recognize similarbinding domains.[7]

KLF2 also exhibits these structural features. ThemRNA transcript is approximately 1.5kilobases in length, and the 37.7kDa protein contains 354 amino acids.[11] KLF2 also shares some homology with EKLF at theN-terminus with aproline-rich region presumed to function as thetransactivation domain.[11]

Gene expression

[edit]

KLF2 was first discovered, and is highly expressed in, the adult mouselung, but it is also expressed temporally duringembryogenesis inerythroid cells,endothelium,lymphoid cells, thespleen, andwhite adipose tissue.[7][11] It is expressed as early as embryonic day 9.5 in the endothelium.

KLF2 has a particularly interesting expression profile in erythroid cells. It is minimally expressed in the primitive and fetal definitive erythroid cells, but is highly expressed in adult definitive erythroid cells, particularly in theproerythroblast and thepolychromatic andorthochromatic normoblasts.[12]

Mouse knockout

[edit]

Homologous recombination ofembryonic stem cells was used to generateKLF2-deficient mouse embryos. Bothvasculogenesis andangiogenesis were normal in the embryos, but they died by embryonic day 14.5 from severehemorrhaging. Thevasculature displayed defective morphology, with thintunica media andaneurysmal dilation that led to rupturing. Aortic vascular smooth muscle cells failed to organize into a normal tunica media, andpericytes were low in number. TheseKLF2-deficient mice thus demonstrated the important role ofKLF2 in blood vessel stabilization during embryogenesis.[13]

Due to embryonic lethality inKLF2-deficient embryos, it is difficult to examine the role ofKLF2 in normalpost-natalphysiology, such as inlung development and function.[14]

Function

[edit]

Lung development

[edit]

Lung buds removed fromKLF2-deficient mouse embryos and cultured from normaltracheobronchial trees. In order to circumvent embryonic lethality usually observed inKLF2-deficient embryos,KLF2homozygous null mouse embryonic stem cells were constructed and used to producechimeric animals. TheseKLF2-deficient embryonic stem cells contribute significantly to development of skeletal muscle, spleen, heart, liver, kidney, stomach, brain, uterus, testis, and skin, but not to the development of the lung. These embryos had lungs arrested in thelate canalicular stage of lung development, with undilatedacinar tubules. In contrast,wild type embryos are born in thesaccular stage of lung development with expanded alveoli. This suggests that KLF2 is an importanttranscription factor required in late gestation for lung development.[7]

Embryonic erythropoiesis

[edit]

KLF2 is now believed to play an important role in embryonic erythropoiesis, specifically in regulating embryonic andfetal β-like globin gene expression. In amurineKLF2-deficient embryo, expression of β-like globin genes normally expressed in primitive erythroid cells was significantly decreased, althoughadult β-globin gene expression was unaffected.[15]

The role of KLF2 in human β-like globin gene expression was further elucidated bytransfection of a murineKLF2-deficient embryo with the human β-globin locus. It was found that KLF2 was important forε-globin (found in embryonic hemoglobin) andγ-globin (found infetal hemoglobin) gene expression. However, as before, KLF2 plays no role in adult β-globin gene expression; this isregulated by EKLF.[15]

However, KLF2 and EKLF have been found to interact in embryonic erythropoiesis.Deletion of bothKLF2 andEKLF in mouse embryos results in fatal anemia earlier than in either single deletion at embryonic day 10.5. This indicates that KLF2 and EKLF interact inembryonic and fetal β-like globin gene expression.[16] It has been shown usingconditional knockout mice that both KLF2 and EKLF bind directly to β-like globinpromoters.[17] There is also evidence to suggest that KLF2 and EKLFsynergistically bind to theMycpromoter, atranscription factor that is associated with gene expression ofα-globin and β-globin in embryonicproerythroblasts.[18]

Endothelial physiology

[edit]

KLF2 expression is induced byfluid laminar flowshear stress, as is caused by blood flow in normal endothelium.[19][20]

This activatesmechanosensitive channels, which in turn activates two pathways; theMEK5/ERK5 pathway, which activatesMEF2, atranscription factor that upregulatesKLF2 gene expression; andPI3K inhibition, which increases the stability ofKLF2 mRNA. Binding of cytokines such asTNFα andIL-1β to theirreceptors activatestranscription factorp65, which also inducesKLF2 expression. KLF2 then has four key functions in endothelium:

Thus KLF2 has an important role in regulating normal endothelium physiology. It is hypothesized thatmyeloid-specific KLF2 plays a protective role inatherosclerosis.[22] Gene expression changes in endothelial cells induced by KLF2 have been demonstrated to be atheroprotective.[20]

T-cell differentiation

[edit]

KLF2 has an important function inT-lymphocytedifferentiation. T-cells are activated and more prone toapoptosis without KLF2, suggesting that KLF2 regulates T-cellquiescence and survival.[7]KLF2-deficientthymocytes also do not express several receptors required for thymusemigration and differentiation into mature T-cells, such assphingosine-1 phosphate receptor 1.[23]

Adipogenesis

[edit]

KLF2 is anegative regulator ofadipocyte differentiation. KLF2 is expressed inpreadipocytes, but not mature adipocytes, and it potently inhibitsPPAR-γ (peroxisome proliferator-activated receptor-γ) expression by inhibitingpromoter activity. This prevents differentiation of preadipocytes into adipocytes, and thus prevents adipogenesis.[24]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000127528Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000055148Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Kozyrev SV, Hansen LL, Poltaraus AB, Domninsky DA, Kisselev LL (Jun 1999)."Structure of the human CpG-island-containing lung Krüppel-like factor (LKLF) gene and its location in chromosome 19p13.11-13 locus".FEBS Lett.448 (1):149–52.Bibcode:1999FEBSL.448..149K.doi:10.1016/S0014-5793(99)00348-8.PMID 10217429.S2CID 20878426.
  6. ^Wani MA, Conkright MD, Jeffries S, Hughes MJ, Lingrel JB (Sep 1999). "cDNA isolation, genomic structure, regulation, and chromosomal localization of human lung Kruppel-like factor".Genomics.60 (1):78–86.doi:10.1006/geno.1999.5888.PMID 10458913.
  7. ^abcdePearson R; Fleetwood J; Eaton S; Crossley M; Bao S (2008). "Krüppel-like transcription factors: a functional family".Int J Biochem Cell Biol.40 (10):1996–2001.doi:10.1016/j.biocel.2007.07.018.PMID 17904406.
  8. ^Hodge D, Coghill E, Keys J, Maguire T, Hartmann B, McDowall A, Weiss M, Grimmond S, Perkins A (April 2006)."A global role for EKLF in definitive and primitive erythropoiesis".Blood.107 (8):3359–70.doi:10.1182/blood-2005-07-2888.PMC 1895762.PMID 16380451.
  9. ^Perkins AC, Sharpe AH, Orkin SH (May 1995). "Lethal beta-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF".Nature.375 (6529):318–22.Bibcode:1995Natur.375..318P.doi:10.1038/375318a0.PMID 7753195.S2CID 4300395.
  10. ^Bieker JJ (2005)."An unexpected entry into the globin real estate market".Blood.106 (7):2230–2231.doi:10.1182/blood-2005-07-2862.
  11. ^abcdeAnderson KP, Kern CB, Crable SC, Lingrel JB (November 1995)."Isolation of a gene encoding a functional zinc finger protein homologous to erythroid Krüppel-like factor: identification of a new multigene family".Mol. Cell. Biol.15 (11):5957–65.doi:10.1128/mcb.15.11.5957.PMC 230847.PMID 7565748.
  12. ^Palis J, Kinglsey P, Stoeckert CJ."Gene 16598: Klf2 (kruppel-like factor 2 (lung))".ErythonDB. Archived fromthe original on 2013-10-29. Retrieved2013-10-28.
  13. ^Kuo CT, Veselits ML, Barton KP, Lu MM, Clendenin C, Leiden JM (November 1997)."The LKLF transcription factor is required for normal tunica media formation and blood vessel stabilization during murine embryogenesis".Genes Dev.11 (22):2996–3006.doi:10.1101/gad.11.22.2996.PMC 316695.PMID 9367982.
  14. ^Wani MA, Wert SE, Lingrel JB (July 1999)."Lung Kruppel-like factor, a zinc finger transcription factor, is essential for normal lung development".J. Biol. Chem.274 (30):21180–5.doi:10.1074/jbc.274.30.21180.PMID 10409672.
  15. ^abBasu P, Morris PE, Haar JL, Wani MA, Lingrel JB, Gaensler KM, Lloyd JA (October 2005)."KLF2 is essential for primitive erythropoiesis and regulates the human and murine embryonic beta-like globin genes in vivo".Blood.106 (7):2566–71.doi:10.1182/blood-2005-02-0674.PMC 1895257.PMID 15947087.
  16. ^Basu P, Lung TK, Lemsaddek W, Sargent TG, Williams DC, Basu M, Redmond LC, Lingrel JB, Haar JL, Lloyd JA (November 2007)."EKLF and KLF2 have compensatory roles in embryonic β-globin gene expression and primitive erythropoiesis".Blood.110 (9):3417–25.doi:10.1182/blood-2006-11-057307.PMC 2200909.PMID 17675555.
  17. ^Alhashem YN, Vinjamur DS, Basu M, Klingmüller U, Gaensler KM, Lloyd JA (July 2011)."Transcription factors KLF1 and KLF2 positively regulate embryonic and fetal β-globin genes through direct promoter binding".J. Biol. Chem.286 (28):24819–27.doi:10.1074/jbc.M111.247536.PMC 3137057.PMID 21610079.
  18. ^Pang CJ, Lemsaddek W, Alhashem YN, Bondzi C, Redmond LC, Ah-Son N, Dumur CI, Archer KJ, Haar JL, Lloyd JA, Trudel M (July 2012)."Kruppel-like factor 1 (KLF1), KLF2, and Myc control a regulatory network essential for embryonic erythropoiesis".Mol. Cell. Biol.32 (13):2628–44.doi:10.1128/MCB.00104-12.PMC 3434496.PMID 22566683.
  19. ^Dekker RJ, van Soest S, Fontijn RD, Salamanca S, de Groot PG, VanBavel E, Pannekoek H, Horrevoets AJ (September 2002)."Prolonged fluid shear stress induces a distinct set of endothelial cell genes, most specifically lung Krüppel-like factor (KLF2)".Blood.100 (5):1689–98.doi:10.1182/blood-2002-01-0046.PMID 12176889.
  20. ^abGimbrone MA Jr, García-Cardeña G (2013)."Vascular endothelium, hemodynamics, and the pathobiology of atherosclerosis".Cardiovascular Pathology.22 (1):9–15.doi:10.1016/j.carpath.2012.06.006.PMC 4564111.PMID 22818581.
  21. ^Atkins GB, Jain MK (June 2007)."Role of Krüppel-like transcription factors in endothelial biology".Circ. Res.100 (12):1686–95.doi:10.1161/01.RES.0000267856.00713.0a.PMID 17585076.
  22. ^Shaked I, Ley K (May 2012)."Protective role for myeloid specific KLF2 in atherosclerosis".Circ. Res.110 (10): 1266.doi:10.1161/CIRCRESAHA.112.270991.PMID 22581916.
  23. ^Carlson CM, Endrizzi BT, Wu J, Ding X, Weinreich MA, Walsh ER, Wani MA, Lingrel JB, Hogquist KA, Jameson SC (July 2006)."Kruppel-like factor 2 regulates thymocyte and T-cell migration".Nature.442 (7100):299–302.Bibcode:2006Natur.442..299C.doi:10.1038/nature04882.PMID 16855590.
  24. ^Banerjee SS, Feinberg MW, Watanabe M, Gray S, Haspel RL, Denkinger DJ, Kawahara R, Hauner H, Jain MK (January 2003)."The Krüppel-like factor KLF2 inhibits peroxisome proliferator-activated receptor-gamma expression and adipogenesis".J. Biol. Chem.278 (4):2581–4.doi:10.1074/jbc.M210859200.PMID 12426306.

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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