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KCNIP1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
KCNIP1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1S1E,2I2R,2NZ0

Identifiers
AliasesKCNIP1, KCHIP1, VABP, potassium voltage-gated channel interacting protein 1
External IDsOMIM:604660;MGI:1917607;HomoloGene:22824;GeneCards:KCNIP1;OMA:KCNIP1 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for KCNIP1
Genomic location for KCNIP1
Band5q35.1Start170,353,487bp[1]
End170,736,632bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for KCNIP1
Genomic location for KCNIP1
Band11|11 A4Start33,579,339bp[2]
End33,943,152bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • nucleus accumbens

  • anterior cingulate cortex

  • caudate nucleus

  • amygdala

  • right frontal lobe

  • prefrontal cortex

  • hypothalamus

  • putamen

  • testicle

  • dorsolateral prefrontal cortex
Top expressed in
  • habenula

  • dorsomedial hypothalamic nucleus

  • lateral hypothalamus

  • ventromedial nucleus

  • superior colliculus

  • lobe of cerebellum

  • cerebellar vermis

  • paraventricular nucleus of hypothalamus

  • lateral septal nucleus

  • islet of Langerhans
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

30820

70357

Ensembl

ENSG00000182132

ENSMUSG00000053519

UniProt

Q9NZI2

Q9JJ57

RefSeq (mRNA)

NM_001034837
NM_001034838
NM_001278339
NM_001278340
NM_014592

NM_001190885
NM_001190886
NM_001290690
NM_027398
NM_001363115

RefSeq (protein)

NP_001030009
NP_001030010
NP_001265268
NP_001265269
NP_055407

NP_001177814
NP_001177815
NP_001277619
NP_081674
NP_001350044

Location (UCSC)Chr 5: 170.35 – 170.74 MbChr 11: 33.58 – 33.94 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Kv channel-interacting protein 1 also known asKChIP1 is aprotein that in humans is encoded by theKCNIP1gene.[5][6]

Function

[edit]

This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs, also frequently called "KChIP"), which belong to therecoverin branch of theEF-hand superfamily.[7] Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in theN-terminus. They are integral subunit components of native Kv4 channel complexes. They may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium. Alternative splicing results in multiple transcript variant encoding different isoforms.[6]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000182132Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000053519Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^An WF, Bowlby MR, Betty M, Cao J, Ling HP, Mendoza G, Hinson JW, Mattsson KI, Strassle BW, Trimmer JS, Rhodes KJ (Feb 2000). "Modulation of A-type potassium channels by a family of calcium sensors".Nature.403 (6769):553–556.Bibcode:2000Natur.403..553A.doi:10.1038/35000592.PMID 10676964.S2CID 4419472.
  6. ^ab"Entrez Gene: KCNIP1 Kv channel interacting protein 1".
  7. ^Burgoyne RD (2007)."Neuronal calcium sensor proteins: generating diversity in neuronal Ca2+ signalling".Nat. Rev. Neurosci.8 (3):182–193.doi:10.1038/nrn2093.PMC 1887812.PMID 17311005.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1s1e: Crystal Structure of Kv Channel-interacting protein 1 (KChIP-1)
    1s1e: Crystal Structure of Kv Channel-interacting protein 1 (KChIP-1)
  • 1s6c: Crystal structure of the complex between KChIP1 and Kv4.2 N1-30
    1s6c: Crystal structure of the complex between KChIP1 and Kv4.2 N1-30
  • 2i2r: Crystal structure of the KChIP1/Kv4.3 T1 complex
    2i2r: Crystal structure of the KChIP1/Kv4.3 T1 complex
  • 2nz0: Crystal structure of potassium channel Kv4.3 in complex with its regulatory subunit KChIP1 (CASP Target)
    2nz0: Crystal structure of potassium channel Kv4.3 in complex with its regulatory subunit KChIP1 (CASP Target)
Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders


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