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KCNAB2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
KCNAB2
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1ZSX

Identifiers
AliasesKCNAB2, AKR6A5, HKvbeta2, HKvbeta2.1, HKvbeta2.2, KCNA2B, KV-BETA-2, potassium voltage-gated channel subfamily A regulatory beta subunit 2
External IDsOMIM:601142;MGI:109239;HomoloGene:56492;GeneCards:KCNAB2;OMA:KCNAB2 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for KCNAB2
Genomic location for KCNAB2
Band1p36.31Start5,990,927bp[1]
End6,101,193bp[1]
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[2]
Chromosome 4 (mouse)
Genomic location for KCNAB2
Genomic location for KCNAB2
Band4 E2|4 83.08 cMStart152,475,199bp[2]
End152,562,367bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Brodmann area 10

  • right frontal lobe

  • pons

  • cingulate gyrus

  • anterior cingulate cortex

  • granulocyte

  • Brodmann area 9

  • nucleus accumbens

  • amygdala

  • spinal ganglia
Top expressed in
  • dentate gyrus of hippocampal formation granule cell

  • neural layer of retina

  • superior frontal gyrus

  • hippocampus proper

  • primary visual cortex

  • primary motor cortex

  • pontine nuclei

  • lateral geniculate nucleus

  • anterior horn of spinal cord

  • medial geniculate nucleus
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8514

16498

Ensembl

ENSG00000069424

ENSMUSG00000028931

UniProt

Q13303

P62482

RefSeq (mRNA)
NM_001199860
NM_001199861
NM_001199862
NM_001199863
NM_003636

NM_172130

NM_001252654
NM_001252655
NM_001252656
NM_010598
NM_001355172

NM_001355173

RefSeq (protein)
NP_001186789
NP_001186790
NP_001186791
NP_001186792
NP_003627

NP_742128
NP_001186789.1
NP_001186790.1
NP_003627.1

NP_001239583
NP_001239584
NP_001239585
NP_034728
NP_001342101

NP_001342102

Location (UCSC)Chr 1: 5.99 – 6.1 MbChr 4: 152.48 – 152.56 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Voltage-gated potassium channel subunit beta-2 is aprotein that in humans is encoded by theKCNAB2gene.[5][6]

Function

[edit]

Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shaker-related subfamily. This member is one of the beta subunits, which are auxiliary proteins associating with functional Kv-alpha subunits. This member alters functional properties of the KCNA4 gene product. Alternative splicing of this gene results in two transcript variants encoding distinct isoforms.[6]

In melanocytic cells KCNAB2 gene expression may be regulated byMITF.[7]

Interactions

[edit]

KCNAB2 has been shown tointeract withKCNA2.[8][9]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000069424Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000028931Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Schultz D, Litt M, Smith L, Thayer M, McCormack K (Mar 1997). "Localization of two potassium channel beta subunit genes, KCNA1B and KCNA2B".Genomics.31 (3):389–91.doi:10.1006/geno.1996.0065.PMID 8838324.
  6. ^ab"Entrez Gene: KCNAB2 potassium voltage-gated channel, shaker-related subfamily, beta member 2".
  7. ^Hoek KS, Schlegel NC, Eichhoff OM, Widmer DS, Praetorius C, Einarsson SO, Valgeirsdottir S, Bergsteinsdottir K, Schepsky A, Dummer R, Steingrimsson E (2008)."Novel MITF targets identified using a two-step DNA microarray strategy".Pigment Cell Melanoma Res.21 (6):665–76.doi:10.1111/j.1755-148X.2008.00505.x.PMID 19067971.
  8. ^Coleman SK, Newcombe J, Pryke J, Dolly JO (Aug 1999)."Subunit composition of Kv1 channels in human CNS".J. Neurochem.73 (2):849–58.doi:10.1046/j.1471-4159.1999.0730849.x.PMID 10428084.
  9. ^Nakahira K, Shi G, Rhodes KJ, Trimmer JS (Mar 1996)."Selective interaction of voltage-gated K+ channel beta-subunits with alpha-subunits".J. Biol. Chem.271 (12):7084–9.doi:10.1074/jbc.271.12.7084.PMID 8636142.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1exb: STRUCTURE OF THE CYTOPLASMIC BETA SUBUNIT-T1 ASSEMBLY OF VOLTAGE-DEPENDENT K CHANNELS
    1exb: STRUCTURE OF THE CYTOPLASMIC BETA SUBUNIT-T1 ASSEMBLY OF VOLTAGE-DEPENDENT K CHANNELS
  • 1qrq: STRUCTURE OF A VOLTAGE-DEPENDENT K+ CHANNEL BETA SUBUNIT
    1qrq: STRUCTURE OF A VOLTAGE-DEPENDENT K+ CHANNEL BETA SUBUNIT
  • 1zsx: Crystal Structure Of Human Potassium Channel Kv Beta-subunit (KCNAB2)
    1zsx: Crystal Structure Of Human Potassium Channel Kv Beta-subunit (KCNAB2)
  • 2a79: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
    2a79: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


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