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Hepatocyte nuclear factor 4 gamma

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

HNF4G
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1LV2

Identifiers
AliasesHNF4G, NR2A2, NR2A3, Hepatocyte nuclear factor 4 gamma
External IDsOMIM:605966;MGI:1353604;HomoloGene:37886;GeneCards:HNF4G;OMA:HNF4G - orthologs
Gene location (Human)
Chromosome 8 (human)
Chr.Chromosome 8 (human)[1]
Chromosome 8 (human)
Genomic location for HNF4G
Genomic location for HNF4G
Band8q21.13Start75,407,914bp[1]
End75,566,834bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for HNF4G
Genomic location for HNF4G
Band3|3 A1Start3,573,090bp[2]
End3,723,112bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • jejunal mucosa

  • duodenum

  • rectum

  • mucosa of colon

  • mucosa of ileum

  • mucosa of sigmoid colon

  • mucosa of transverse colon

  • gallbladder

  • right lobe of liver

  • body of pancreas
Top expressed in
  • duodenum

  • jejunum

  • urethra

  • ileum

  • epithelium of small intestine

  • male urethra

  • right kidney

  • proximal tubule

  • intestinal villus

  • migratory enteric neural crest cell
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3174

30942

Ensembl

ENSG00000164749

ENSMUSG00000017688

UniProt

Q14541

Q9WUU6

RefSeq (mRNA)

NM_004133
NM_001330561

NM_013920
NM_001395870

RefSeq (protein)

NP_001317490
NP_004124

NP_038948
NP_001382799

Location (UCSC)Chr 8: 75.41 – 75.57 MbChr 3: 3.57 – 3.72 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Hepatocyte nuclear factor 4 gamma (HNF4G) also known asNR2A2 (nuclear receptor subfamily 2, group A, member 2) is anuclear receptor that in humans is encoded by theHNF4Ggene.[5][6][7]

Function

[edit]

HNF4G is a transcription factor that has been shown to play a significant role in intestinal epithelial cell differentiation and function. Research using integrative multi-omics analysis of intestinal organoid differentiation has revealed that HNF4G acts as a master regulator of gene regulation in differentiation towards the enterocyte lineage.[8] The study demonstrated widespread binding to promoters and enhancers that are activated in enterocytes, and that the loss of Hnf4g results in a partial loss of enterocyte differentiation, indicating its importance in maintaining the enterocyte lineage.

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000164749Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000017688Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: HNF4G hepatocyte nuclear factor 4, gamma".
  6. ^Drewes T, Senkel S, Holewa B, Ryffel GU (March 1996)."Human hepatocyte nuclear factor 4 isoforms are encoded by distinct and differentially expressed genes".Molecular and Cellular Biology.16 (3):925–931.doi:10.1128/mcb.16.3.925.PMC 231074.PMID 8622695.
  7. ^Wisely GB, Miller AB, Davis RG, Thornquest AD, Johnson R, Spitzer T, et al. (September 2002)."Hepatocyte nuclear factor 4 is a transcription factor that constitutively binds fatty acids".Structure.10 (9):1225–1234.doi:10.1016/S0969-2126(02)00829-8.PMID 12220494.
  8. ^Lindeboom RG, van Voorthuijsen L, Oost KC, Rodríguez-Colman MJ, Luna-Velez MV, Furlan C, et al. (June 2018)."Integrative multi-omics analysis of intestinal organoid differentiation".Molecular Systems Biology.14 (6) e8227.doi:10.15252/msb.20188227.PMC 6018986.PMID 29945941.

Further reading

[edit]
  • Plengvidhya N, Antonellis A, Wogan LT, Poleev A, Borgschulze M, Warram JH, et al. (October 1999). "Hepatocyte nuclear factor-4gamma: cDNA sequence, gene organization, and mutation screening in early-onset autosomal-dominant type 2 diabetes".Diabetes.48 (10):2099–2102.doi:10.2337/diabetes.48.10.2099.PMID 10512380.
  • Ozeki T, Takahashi Y, Nakayama K, Funayama M, Nagashima K, Kodama T, et al. (January 2003). "Hepatocyte nuclear factor-4 alpha/gamma and hepatocyte nuclear factor-1 alpha as causal factors of interindividual difference in the expression of human dihydrodiol dehydrogenase 4 mRNA in human livers".Pharmacogenetics.13 (1):49–53.doi:10.1097/00008571-200301000-00007.PMID 12544512.

External links

[edit]
PDB gallery
  • 1lv2: Hepatocyte Nuclear Factor 4 is a Transcription Factor that Constitutively Binds Fatty Acids
    1lv2: Hepatocyte Nuclear Factor 4 is a Transcription Factor that Constitutively Binds Fatty Acids
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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