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Haplogroup M-P256

From Wikipedia, the free encyclopedia
Human Y chromosome DNA grouping common in New Guinea
This article is about the human Y-DNA haplogroup. For the human mtDNA haplogroup, seeHaplogroup M (mtDNA).
Haplogroup M-P256
Possible time of origin32,000-47,000 years BP[1]
Possible place of originWallacea (eastern Indonesia)
orNew Guinea [2]
AncestorK2b1
Defining mutationsP256

Haplogroup M, AKAM-P256 andHaplogroup K2b1b (previously K2b1d) is aY-chromosome DNA haplogroup. M-P256 is a descendant haplogroup ofHaplogroup K2b1, and is believed to have first appeared between 32,000 and 47,000 years ago.[1]

M-P256 is the most frequently occurring Y-chromosome haplogroup inWest Papua and westernPapua New Guinea.[3] In addition, M-P256 is also found in neighboring parts ofMelanesia,Indonesia andindigenous Australians.

Phylogenetic structure

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Thisphylogenetic tree of haplogroup subclades is based primarily on the trees published byYCC in 2008[4] and ISOGG in 2016.[5]

  • M* (P256)
    • M1 (M4, M5/P73, M106, M186, M189, M296, P35)
      • M1a(P34_1, P34_2, P34_3, P34_4, P34_5)
        • M1a1 (P51)
        • M1a2 (P94)
      • M1b (P87)
        • M1b1 (M104_1/P22_1, M104_2/P22_2)
          • M1b1a (M16)
          • M1b1b (M83)
    • M2 (M353, M387)
      • M2a (M177/SRY9138)
    • M3 (P117, P118)

Distribution

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M* (M-P256*)

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The paragroup M-P256* is found at a low frequency inNew Guinea (6.3%) andFlores (2.5%).[2]

M1 (M-M4)

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Haplogroup M-M4
Possible time of origin8,200 [3,800–20,600] years BP[3]
Possible place of originSoutheast Asia -Melanesia[citation needed]
AncestorM-P256
Defining mutationsM4, M5/P73, M106, M186, M189, M296, P35[citation needed]

This group is found frequently inNew Guinea andMelanesia, with a moderate distribution in neighboring parts ofIndonesia,Micronesia, andPolynesia.

An extreme geographical outlier was apparently identified in a 2012 study, which reported aHazara individual fromMazar-e Sharif, Afghanistan, with M1 (among a sample of 60 males from the mentioned area).[7] The Hazara individual carried the SNP M186 (which is believed to be equivalent to M4).

Old names (YCC 2002/2008)M-M4
Jobling and Tyler-Smith 200024
Underhill 2000VIII
Hammer 20011U
Karafet 200137
Semino 2000Eu16
Su 1999H17
Capelli 2001E
YCC 2002 (Longhand)M*
YCC 2005 (Longhand)M
YCC 2008 (Longhand)M1
YCC 2010r (Longhand)M1

M1a (M-P34)

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M1a (M-P34) is the most frequently occurring Y-chromosome DNA haplogroup inWestern New Guinea. It is also found with moderate frequency in neighboring parts ofIndonesia (Maluku,Nusa Tenggara) and throughoutPapua New Guinea, including offshore islands.[3][8]

Old names (YCC 2002/2008)M-P34
Jobling and Tyler-Smith 200024
Underhill 2000VIII
Hammer 20011U
Karafet 200137
Semino 2000Eu16
Su 1999H17
Capelli 2001E
YCC 2002 (Longhand)M1
YCC 2005 (Longhand)M1
YCC 2008 (Longhand)M1a
YCC 2010r (Longhand)M1a

M1b (M-P87)

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M1b M-P87(xM104/P22) has been found in approximately 18% (20/109) of a pool of samples fromNew Ireland, approximately 12% (5/43) of a sample ofLavongai fromNew Hanover, approximately 5% (19/395) of a pool of samples fromNew Britain (and, in particular, in about 24% (15/63) ofBaining fromEast New Britain), in addition to oneSaposa individual from northernBougainville, and another individual from the north coast ofPapua New Guinea.[1]

The subclade M1b1 (M104_1/P22_1, M104_2/P22_2) is found frequently in populations of theBismarck Archipelago andBougainville Island, with a moderate distribution inNew Guinea,Fiji,Tonga,East Futuna, andSamoa.[1][9]

Old names (YCC 2002/2008)M-P22
Jobling and Tyler-Smith 200024
Underhill 2000VIII
Hammer 20011U
Karafet 200138
Semino 2000Eu16
Su 1999H17
Capelli 2001E
YCC 2002 (Longhand)M2*
YCC 2005 (Longhand)M2a
YCC 2008 (Longhand)M1b1
YCC 2010r (Longhand)M1b1

M2 (M-M353)

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M2 is found at a low frequency inFiji andEast Futuna.[10]

The subclade M2a (M-M177, also referred to as M-SRY9138) has been found in oneNasioi individual from the eastern coast ofBougainville and in one individual fromMalaita Province of theSolomon Islands.[11]

Alternative names previously used within peer-reviewed literature for the M2a subclade are listed below.

Old names (YCC 2002/2008)K-SRY9138/M-SRY9138
AKA M-M177
Jobling and Tyler-Smith 200023
Underhill 2000VIII
Hammer 20011E
Karafet 200125
Semino 2000Eu16
Su 1999H5
Capelli 2001F
YCC 2002 (Longhand)K1
YCC 2005 (Longhand)K1
YCC 2008 (Longhand)M2a
YCC 2010r (Longhand)M2a

M3 (M-P117)

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M3 (P117, P118) is found frequently in populations ofNew Britain, and is also observed occasionally in northernBougainville,Fiji, andEast Futuna.[9][1]

Previous phylogenetic history

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Main article:Conversion table for Y chromosome haplogroups

Prior to 2002, at least seven different naming systems for the Y chromosome phylogenetic tree were used within academic literature, leading to considerable confusion. To resolve this, in 2002, major research groups collaborated to form the Y-Chromosome Consortium (YCC). This resulted in a joint paper publication that contained a single new tree as a standard to use by the scientific community. Later, another group of scientists with an interest in population genetics and genetic genealogy worked to continually improve the naming system.

The table below brings together the nomenclature used in Haplogroup M studies, prior to the landmark 2002 YCC Tree, enabling researchers reviewing older literature to quickly convert between the different nomenclatures that were in use.

YCC 2002/2008 (Shorthand)(α)(β)(γ)(δ)(ε)(ζ)(η)YCC 2002 (Longhand)YCC 2005 (Longhand)YCC 2008 (Longhand)YCC 2010r (Longhand)ISOGG 2006ISOGG 2007ISOGG 2008ISOGG 2009ISOGG 2010ISOGG 2011ISOGG 2012
M424VIII1U37Eu16H17EM*MM1M1-------
M-P3424VIII1U37Eu16H17EM1M1M1aM1a-------
M-P22/M-M10424VIII1U38Eu16H17EM2*M2aM1b1M1b1-------
M-M1624VIII1U39Eu16H17EM2aM2a1M1b1aM1b1a-------
M-M8324VIII1U38Eu16H17EM2bM2a2M1b1bM1b1b-------
K-SRY9138/M-SRY913823VIII1E25Eu16H5FK1K1M2aM2a-------
Sources

The following research teams per their publications were represented in the creation of the YCC Tree.

Karafet's 2008 paper introduced a number of changes, compared to the previous2006 ISOGG tree.[4] Before the discovery of the P256 marker, the current subgroup M-M4 (defined by the M4 marker) previously represented the whole of Haplogroup M-P256; and subgroups M2 and M3 were formerly classed as subgroups K1 and K7 of the parentHaplogroup K.[citation needed]

References

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  1. ^abcdeScheinfeldt, Laura; Friedlaender, Françoise; Friedlaender, Jonathan; Latham, Krista; Koki, George; Karafet, Tatyana; Hammer, Michael; Lorenz, Joseph (2006-06-05)."Unexpected NRY Chromosome Variation in Northern Island Melanesia".Molecular Biology and Evolution.23 (8):1628–1641.doi:10.1093/molbev/msl028.ISSN 1537-1719.PMID 16754639.
  2. ^abTatiana M. Karafet, Brian Hallmark, Murray P. Cox,Herawati Sudoyo [id],Sean Downey,J. Stephen Lansing and Michael F. Hammer, "Major East–West Division Underlies Y Chromosome Stratification across Indonesia",Molecular Biological Evolution, (2010), vol. 27, no. 8, pp. 1833-1844.
  3. ^abcdefghijklmnopKayser, Manfred; Brauer, Silke; Weiss, Gunter; Schiefenhövel, Wulf; Underhill, Peter; Shen, Peidong; Oefner, Peter; Tommaseo-Ponzetta, Mila; Stoneking, Mark (2003)."Reduced Y-Chromosome, but Not Mitochondrial DNA, Diversity in Human Populations from West New Guinea".The American Journal of Human Genetics.72 (2):281–302.doi:10.1086/346065.ISSN 0002-9297.PMC 379223.PMID 12532283.
  4. ^abKarafet, Tatiana M.; Mendez, Fernando L.; Meilerman, Monica B.; Underhill, Peter A.; Zegura, Stephen L.; Hammer, Michael F. (2008-05-01)."New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree".Genome Research.18 (5):830–838.doi:10.1101/gr.7172008.ISSN 1088-9051.PMC 2336805.PMID 18385274.
  5. ^"ISOGG 2018 Y-DNA Haplogroup M".isogg.org. Retrieved2024-09-18.
  6. ^Nagle, Nano; Ballantyne, Kaye N.; van Oven, Mannis; Tyler-Smith, Chris; Xue, Yali; Taylor, Duncan; Wilcox, Stephen; Wilcox, Leah; Turkalov, Rust; van Oorschot, Roland A.H.; McAllister, Peter; Williams, Lesley; Kayser, Manfred; Mitchell, Robert J.; The Genographic Consortium (2016)."Antiquity and diversity of aboriginal Australian Y -chromosomes".American Journal of Physical Anthropology.159 (3):367–381.doi:10.1002/ajpa.22886.ISSN 0002-9483.PMID 26515539.
  7. ^Haber, Marc; Platt, Daniel E.; Bonab, Maziar Ashrafian; Youhanna, Sonia C.; Soria-Hernanz, David F.; Martínez-Cruz, Begoña; Douaihy, Bouchra; Ghassibe-Sabbagh, Michella; Rafatpanah, Hoshang; Ghanbari, Mohsen; Whale, John; Balanovsky, Oleg; Wells, R. Spencer; Comas, David; Tyler-Smith, Chris (2012-03-28)."Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events".PLOS ONE.7 (3): e34288.Bibcode:2012PLoSO...734288H.doi:10.1371/journal.pone.0034288.ISSN 1932-6203.PMC 3314501.PMID 22470552.
  8. ^Karafet, Tatiana M; Lansing, J. S; Redd, Alan J; Watkins, Joseph C; Surata, S. P. K; Arthawiguna, W. A; Mayer, Laura; Bamshad, Michael; Jorde, Lynn B; Hammer, Michael F (2005)."Balinese Y-Chromosome Perspective on the Peopling of Indonesia: Genetic Contributions from Pre-Neolithic Hunter-Gatherers, Austronesian Farmers, and Indian Traders".Human Biology.77 (1):93–114.doi:10.1353/hub.2005.0030.hdl:1808/13586.ISSN 1534-6617.PMID 16114819.
  9. ^abKayser, M.; Choi, Y.; van Oven, M.; Mona, S.; Brauer, S.; Trent, R. J.; Suarkia, D.; Schiefenhovel, W.; Stoneking, M. (2008-04-03)."The Impact of the Austronesian Expansion: Evidence from mtDNA and Y Chromosome Diversity in the Admiralty Islands of Melanesia".Molecular Biology and Evolution.25 (7):1362–1374.doi:10.1093/molbev/msn078.ISSN 0737-4038.
  10. ^Kayser, Manfred; Brauer, Silke; Cordaux, Richard; Casto, Amanda; Lao, Oscar; Zhivotovsky, Lev A.; Moyse-Faurie, Claire; Rutledge, Robb B.; Schiefenhoevel, Wulf; Gil, David; Lin, Alice A.; Underhill, Peter A.; Oefner, Peter J.; Trent, Ronald J.; Stoneking, Mark (2006)."Melanesian and Asian Origins of Polynesians: mtDNA and Y Chromosome Gradients Across the Pacific".Molecular Biology and Evolution.23 (11):2234–2244.doi:10.1093/molbev/msl093.hdl:11858/00-001M-0000-0010-0145-0.ISSN 1537-1719.PMID 16923821.
  11. ^Cox, Murray P.; Mirazón Lahr, Marta (2006)."Y-chromosome diversity is inversely associated with language affiliation in paired Austronesian- and Papuan-speaking communities from Solomon Islands".American Journal of Human Biology.18 (1):35–50.doi:10.1002/ajhb.20459.ISSN 1042-0533.PMID 16378340.

Sources for conversion tables

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External links

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See also

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Wikimedia Commons has media related toHaplogroup M of Y-DNA.
This article needs to beupdated. Please help update this article to reflect recent events or newly available information.(February 2021)
Footnotes
  1. ^Van Oven M, Van Geystelen A, Kayser M, Decorte R, Larmuseau HD (2014). "Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome".Human Mutation.35 (2):187–91.doi:10.1002/humu.22468.PMID 24166809.S2CID 23291764.
  2. ^International Society of Genetic Genealogy (ISOGG; 2015),Y-DNA Haplogroup Tree 2015. (Access date: 1 February 2015.)
  3. ^Haplogroup A0-T is also known as A-L1085 (and previously as A0'1'2'3'4).
  4. ^Haplogroup A1 is also known as A1'2'3'4.
  5. ^ F-Y27277, sometimes known as F2'4, is both the parent clade of F2 and F4 and a child of F-M89.
  6. ^Haplogroup LT (L298/P326) is also known as Haplogroup K1.
  7. ^Between 2002 and 2008,Haplogroup T-M184 was known as "Haplogroup K2". That name has since been re-assigned toK-M526, the sibling of Haplogroup LT.
  8. ^ Haplogroup K2b (M1221/P331/PF5911) is also known as Haplogroup MPS.
  9. ^ Haplogroup K2b1 (P397/P399) is also known as Haplogroup MS, but has a broader and more complex internal structure.
  10. ^ Haplogroup P (P295) is also klnown as K2b2.
  11. ^K-M2313*, which as yet has no phylogenetic name, has been documented in two living individuals, who have ethnic ties to India and South East Asia. In addition, K-Y28299, which appears to be a primary branch of K-M2313, has been found in three living individuals from India. See: Poznikop. cit.;YFull YTree v5.08, 2017, "K-M2335", and;PhyloTree, 2017, "Details of the Y-SNP markers included in the minimal Y tree" (Access date of these pages: 9 December 2017)
  12. ^ Haplogroup S, as of 2017, is also known as K2b1a. (Previously the name Haplogroup S was assigned to K2b1a4.)
  13. ^ Haplogroup M, as of 2017, is also known as K2b1b. (Previously the name Haplogroup M was assigned to K2b1d.)
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