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HOXD3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HOXD3
Identifiers
AliasesHOXD3, HOX1D, HOX4, HOX4A, Hox-4.1, homeobox D3
External IDsOMIM:142980;MGI:96207;HomoloGene:5034;GeneCards:HOXD3;OMA:HOXD3 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for HOXD3
Genomic location for HOXD3
Band2q31.1Start176,136,612bp[1]
End176,173,102bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for HOXD3
Genomic location for HOXD3
Band2 C3|2 44.13 cMStart74,542,271bp[2]
End74,578,786bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • corpus epididymis

  • germinal epithelium

  • right uterine tube

  • body of uterus

  • seminal vesicula

  • tail of epididymis

  • gonad

  • caput epididymis

  • right ovary

  • sperm
Top expressed in
  • ureteric bud

  • tail of embryo

  • Medulla Oblongata

  • enteric nervous system

  • wall of urinary bladder

  • urethra

  • male urethra

  • ureter

  • renal pelvis

  • mucosa of urinary bladder
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3232

15434

Ensembl

ENSG00000128652

ENSMUSG00000079277

UniProt

P31249

P09027

RefSeq (mRNA)

NM_006898

NM_010468

RefSeq (protein)

NP_008829

NP_034598

Location (UCSC)Chr 2: 176.14 – 176.17 MbChr 2: 74.54 – 74.58 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein Hox-D3 is aprotein that in humans is encoded by theHOXD3gene.[5][6][7]

Function

[edit]

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, located on different chromosomes, consisting of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXD genes located at 2q31-2q37 chromosome regions. Deletions that removed the entire HOXD gene cluster or 5' end of this cluster have been associated with severe limb and genital abnormalities. The protein encoded by this gene may play a role in the regulation of cell adhesion processes.[7]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000128652Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000079277Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^McAlpine PJ, Shows TB (Jul 1990). "Nomenclature for human homeobox genes".Genomics.7 (3): 460.doi:10.1016/0888-7543(90)90186-X.PMID 1973146.
  6. ^Scott MP (Nov 1992). "Vertebrate homeobox gene nomenclature".Cell.71 (4):551–3.doi:10.1016/0092-8674(92)90588-4.PMID 1358459.S2CID 13370372.
  7. ^ab"Entrez Gene: HOXD3 homeobox D3".

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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