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HOXC10

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HOXC10
Identifiers
AliasesHOXC10, HOX3I, homeobox C10
External IDsOMIM:605560;MGI:96192;HomoloGene:9680;GeneCards:HOXC10;OMA:HOXC10 - orthologs
Gene location (Human)
Chromosome 12 (human)
Chr.Chromosome 12 (human)[1]
Chromosome 12 (human)
Genomic location for HOXC10
Genomic location for HOXC10
Band12q13.13Start53,985,065bp[1]
End53,990,279bp[1]
Gene location (Mouse)
Chromosome 15 (mouse)
Chr.Chromosome 15 (mouse)[2]
Chromosome 15 (mouse)
Genomic location for HOXC10
Genomic location for HOXC10
Band15 F3|15 58.03 cMStart102,875,231bp[2]
End102,880,328bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gastrocnemius muscle

  • buccal mucosa cell

  • renal medulla

  • popliteal artery

  • tibial arteries

  • tibialis anterior muscle

  • human kidney

  • quadriceps femoris muscle

  • vastus lateralis muscle

  • Achilles tendon
Top expressed in
  • tail of embryo

  • knee joint

  • muscle of thigh

  • medial head of gastrocnemius muscle

  • lumbar subsegment of spinal cord

  • quadriceps femoris muscle

  • tibialis anterior muscle

  • vastus lateralis muscle

  • genital tubercle

  • skeletal muscle tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3226

209448

Ensembl

ENSG00000180818

ENSMUSG00000022484

UniProt

Q9NYD6

P31257

RefSeq (mRNA)

NM_017409

NM_010462

RefSeq (protein)

NP_059105

NP_034592

Location (UCSC)Chr 12: 53.99 – 53.99 MbChr 15: 102.88 – 102.88 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein Hox-C10 is aprotein that in humans is encoded by theHOXC10gene.[5][6]

Function

[edit]

This gene belongs to thehomeobox family of genes. The homeobox genes encode a highly conserved family oftranscription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. The protein level is controlled during cell differentiation and proliferation, which may indicate this protein has a role in origin activation.[6]

Pathology

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000180818Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000022484Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Scott MP (Nov 1992). "Vertebrate homeobox gene nomenclature".Cell.71 (4):551–3.doi:10.1016/0092-8674(92)90588-4.PMID 1358459.S2CID 13370372.
  6. ^ab"Entrez Gene: HOXC10 homeobox C10".
  7. ^Ansari KI, Hussain I, Kasiri S, Mandal SS (Feb 2012)."HOXC10 is overexpressed in breast cancer and transcriptionally regulated by estrogen via involvement of histone methylases MLL3 and MLL4".Journal of Molecular Endocrinology.48 (1):61–75.doi:10.1530/JME-11-0078.PMID 22143955.
  8. ^Pathiraja TN, Nayak SR, Xi Y, Jiang S, Garee JP, Edwards DP, Lee AV, Chen J, Shea MJ, Santen RJ, Gannon F, Kangaspeska S, Jelinek J, Issa JP, Richer JK, Elias A, McIlroy M, Young LS, Davidson NE, Schiff R, Li W, Oesterreich S (Mar 2014)."Epigenetic reprogramming of HOXC10 in endocrine-resistant breast cancer".Science Translational Medicine.6 (229): 229ra41.doi:10.1126/scitranslmed.3008326.PMC 4277862.PMID 24670685.

Further reading

[edit]

External links

[edit]
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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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