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HOXA2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
HOXA2
Identifiers
AliasesHOXA2, HOX1K, MCOHI, homeobox A2
External IDsOMIM:604685;MGI:96174;HomoloGene:4901;GeneCards:HOXA2;OMA:HOXA2 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for HOXA2
Genomic location for HOXA2
Band7p15.2Start27,100,354bp[1]
End27,102,686bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for HOXA2
Genomic location for HOXA2
Band6 B3|6 25.4 cMStart52,139,397bp[2]
End52,141,811bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of transverse colon

  • Descending thoracic aorta

  • C1 segment

  • gastric mucosa

  • left uterine tube

  • ascending aorta

  • muscle layer of sigmoid colon

  • body of uterus

  • tibial arteries

  • rectum
Top expressed in
  • neuromere

  • rhombomere

  • tail of embryo

  • thoracic diaphragm

  • main bronchus

  • tongue

  • genital tubercle

  • female urethra

  • hair

  • ureter
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3199

15399

Ensembl

ENSG00000105996

ENSMUSG00000014704

UniProt

O43364

P31245

RefSeq (mRNA)

NM_006735

NM_010451

RefSeq (protein)

NP_006726

NP_034581

Location (UCSC)Chr 7: 27.1 – 27.1 MbChr 6: 52.14 – 52.14 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein Hox-A2 is aprotein that in humans is encoded by theHOXA2gene.[5]

Function

[edit]

In vertebrates, the genes encoding the class of transcription factors calledhomeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. The encoded protein may be involved in the placement of hindbrain segments in the proper location along the anterior-posterior axis during development. Two transcript variants encoding two different isoforms have been found for this gene, with only one of the isoforms containing the homeodomain region.[6]

HOXA2 controls the embryonic development of the lower and middle part of the face and of themiddle ear. Mutations in it are known to causemicrotia,hearing impairment, andcleft palate.

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000105996Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000014704Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Scott MP (November 1992). "Vertebrate homeobox gene nomenclature".Cell.71 (4):551–3.doi:10.1016/0092-8674(92)90588-4.PMID 1358459.S2CID 13370372.
  6. ^"Entrez Gene: HOXA2 homeobox A2".

Further reading

[edit]
Stub icon

This article on agene on humanchromosome 7 is astub. You can help Wikipedia byexpanding it.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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