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HMGB1

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens
HMGB1
Available structures
PDBHuman UniProt search:PDBeRCSB
List of PDB id codes

2LY4,2RTU,2YRQ

Identifiers
AliasesHMGB1, HMG1, HMG3, SBP-1, HMG-1, high mobility group box 1, HMGB-1
External IDsOMIM:163905;HomoloGene:110676;GeneCards:HMGB1;OMA:HMGB1 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for HMGB1
Genomic location for HMGB1
Band13q12.3Start30,456,704bp[1]
End30,617,597bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ventricular zone

  • ganglionic eminence

  • Achilles tendon

  • smooth muscle tissue

  • body of uterus

  • appendix

  • trabecular bone

  • rectum

  • C1 segment

  • canal of the cervix
    n/a
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3146

n/a

Ensembl

ENSG00000189403

n/a

UniProt

P09429

n/a

RefSeq (mRNA)

NM_001313892
NM_001313893
NM_002128

n/a

RefSeq (protein)
NP_001300821
NP_001300822
NP_002119
NP_001350590
NP_001357268

NP_001357269
NP_001357270
NP_001300821.1
NP_001300822.1
NP_002119.1

n/a

Location (UCSC)Chr 13: 30.46 – 30.62 Mbn/a
PubMed search[2]n/a
Wikidata
View/Edit Human

High mobility group box 1 protein, also known ashigh-mobility group protein 1 (HMG-1) andamphoterin, is aprotein that in humans is encoded by theHMGB1gene.[3][4]

HMG-1 belongs to thehigh mobility group and contains aHMG-box domain.

Function

[edit]

Like thehistones, HMGB1 is among the most important chromatin proteins. In thenucleus HMGB1 interacts withnucleosomes, transcription factors, andhistones.[5] This nuclear protein organizes the DNA and regulates transcription.[6] After binding, HMGB1 bends[7]DNA, which facilitates the binding of other proteins. HMGB1 supports transcription of many genes in interactions with many transcription factors. It also interacts with nucleosomes to loosen packed DNA and remodel the chromatin. Contact with core histones changes the structure of nucleosomes.

The presence of HMGB1 in the nucleus depends on posttranslational modifications. When the protein is not acetylated, it stays in the nucleus, but hyperacetylation on lysine residues causes it to translocate into the cytosol.[6]

HMGB1 has been shown to play an important role in helping theRAG endonuclease form a paired complex duringV(D)J recombination.[8]

Role in inflammation

[edit]

HMGB1 is secreted by immune cells (e.g.macrophages,monocytes anddendritic cells) throughleaderless secretory pathway.[6] Activated macrophages and monocytes secrete HMGB1 as acytokine mediator ofinflammation.[9] Antibodies that neutralize HMGB1 confer protection against damage and tissue injury duringarthritis,colitis,ischemia,sepsis, endotoxemia, andsystemic lupus erythematosus.[citation needed] The mechanism of inflammation and damage consists of binding to toll-like receptor TLR2 andTLR4, which mediates HMGB1-dependent activation of macrophage cytokine release. This positions HMGB1 at the intersection of sterile and infectious inflammatory responses.[10][11]

ADP-ribosylation of HMGB1 byPARP1 inhibits removal ofapoptotic cells, thereby sustaining inflammation.[12] TLR4 binding by HMGB1 orlipopolysaccharide (LPS) sustains ADP-ribosylation of HMGB1 by PARP1 thereby serving as an amplification loop for inflammation.[12]

HMGB1 has been proposed as aDNA vaccineadjuvant.[13] HMGB1 released from tumour cells was demonstrated to mediate anti-tumour immune responses by activating toll-like receptor 2 (TLR2) signaling on bone marrow-derived GBM-infiltrating DCs.[14]

Interactions

[edit]

HMGB1 has tointeract withp53.[15][16]

HMGB1 is a nuclear protein that binds to DNA and acts as an architectural chromatin-binding factor. It can also be released from cells, an extracellular form in which it may bind to toll-like receptors (TLRs) or an inflammatory receptor called the receptor for advanced glycation end-productsRAGE. Release from cells seems to involve two distinct processes: necrosis, in which case cell membranes are permeabilized and intracellular constituents may diffuse out of the cell; and some form of active or facilitated secretion induced by signaling through theNF-κB. HMGB1 also translocates to the cytosol under stressful conditions such as increased ROS inside the cells. Under such conditions, HMGB1 promotes cell survival by sustaining autophagy through interactions with beclin-1. It is largely considered as an antiapoptotic protein.

HMGB1 can interact with TLR ligands and cytokines, and activates cells through the multiple surface receptors includingTLR2,TLR4, and RAGE.[17]

Interaction via TLR4

[edit]

Some actions of HMGB1 are mediated through thetoll-like receptors (TLRs).[18] Interaction between HMGB1 and TLR4 results in upregulation ofNF-κB, which leads to increased production and release ofcytokines. HMGB1 is also able to interact with TLR4 onneutrophils to stimulate the production ofreactive oxygen species by NADPH oxidase.[6][19] HMGB1-LPS complex activates TLR4, and causes the binding of adapter proteins (MyD88 and others), leading tosignal transduction and the activation of various signaling cascades. The downstream effect of this signaling is to activateMAPK and NF-κB, and thus cause the production of inflammatory molecules such as cytokines.[20][21]

Clinical significance

[edit]

HMGB1 has been proposed as a target for cancer therapy,[22] as well as a vector for reducing inflammation fromSARS-CoV-2 infection.[23] It also serves as a biomarker forpost-COVID-19 condition.[24]

Theneurodegenerative diseasespinocerebellar ataxia type 1 (SCA1) is caused bymutation in theataxin 1 gene. In a mouse model of SCA1, mutant ataxin 1 protein mediated the reduction or inhibition of HMGB1 in themitochondria ofneurons.[25] HMGB1 regulatesDNA architectural changes essential for repair ofDNA damage. In the SCA1 mouse model, over-expression of the HMGB1 protein by means of an introduced virus vector bearing the HMGB1 gene facilitated repair of the mitochondrial DNA damage, ameliorated theneuropathology and the motor defects of the SCA1 mice, and also extended their lifespan.[25] Thus impairment of HMGB1 function appears to have a key role in the pathogenesis of SCA1.

Recently, a study provided evidence of an association between raised levels of HMGB1 and attention to detail and systemizing in unmedicated children with high-functioning autism spectrum disorder (ASD), suggesting that inflammatory processes mediated by HMGB1 may play a role in the disruption of neurobiological mechanisms regulating cognitive processes in ASD.[26] In this study, HMGB1 serum concentrations in children with ASD were found significantly higher than those of typically developing children. Additionally, HMGB1 serum concentrations were positively correlated with the Autistic quotient (AQ) attention to detail score and the Systemizing Quotient (SQ) total score in the ASD group.[27] However, comprehensive evidence in children is limited, highlighting the need for in-depth research towards understanding possible mechanisms linking HMGB1 with the core features of ASD. Nevertheless, it has been suggested that HMGB1 could be a reliable inflammatory marker, explaining the link between inflammatory processes and several autistic traits, and therefore a possible therapeutic target in this neurodevelopmental disorder.

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000189403Ensembl, May 2017
  2. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^Ferrari S, Finelli P, Rocchi M, Bianchi ME (July 1996). "The active gene that encodes human high mobility group 1 protein (HMG1) contains introns and maps to chromosome 13".Genomics.35 (2):367–71.doi:10.1006/geno.1996.0369.PMID 8661151.
  4. ^Chou DK, Evans JE, Jungalwala FB (April 2001). "Identity of nuclear high-mobility-group protein, HMG-1, and sulfoglucuronyl carbohydrate-binding protein, SBP-1, in brain".Journal of Neurochemistry.77 (1):120–31.doi:10.1046/j.1471-4159.2001.t01-1-00209.x (inactive 13 November 2025).PMID 11279268.{{cite journal}}: CS1 maint: DOI inactive as of November 2025 (link)
  5. ^Bianchi ME, Agresti A (October 2005). "HMG proteins: dynamic players in gene regulation and differentiation".Current Opinion in Genetics & Development.15 (5):496–506.doi:10.1016/j.gde.2005.08.007.PMID 16102963.
  6. ^abcdKlune JR, Dhupar R, Cardinal J, Billiar TR, Tsung A (2008)."HMGB1: endogenous danger signaling".Molecular Medicine.14 (7–8):476–84.doi:10.2119/2008-00034.Klune.PMC 2323334.PMID 18431461.
  7. ^Murugesapillai D, McCauley MJ, Maher LJ, Williams MC (February 2017)."Single-molecule studies of high-mobility group B architectural DNA bending proteins".Biophysical Reviews.9 (1):17–40.doi:10.1007/s12551-016-0236-4.PMC 5331113.PMID 28303166.
  8. ^Ciubotaru M, Trexler AJ, Spiridon LN, Surleac MD, Rhoades E, Petrescu AJ, Schatz DG (February 2013)."RAG and HMGB1 create a large bend in the 23RSS in the V(D)J recombination synaptic complexes".Nucleic Acids Research.41 (4):2437–54.doi:10.1093/nar/gks1294.PMC 3575807.PMID 23293004.
  9. ^Wang H, Bloom O, Zhang M, Vishnubhakat JM, Ombrellino M, Che J, Frazier A, Yang H, Ivanova S, Borovikova L, Manogue KR, Faist E, Abraham E, Andersson J, Andersson U, Molina PE,Abumrad NN, Sama A,Tracey KJ (July 1999). "HMG-1 as a late mediator of endotoxin lethality in mice".Science.285 (5425):248–51.doi:10.1126/science.285.5425.248.PMID 10398600.
  10. ^Yang H, Hreggvidsdottir HS, Palmblad K, Wang H, Ochani M, Li J, Lu B, Chavan S, Rosas-Ballina M, Al-Abed Y, Akira S, Bierhaus A, Erlandsson-Harris H, Andersson U, Tracey KJ (June 2010)."A critical cysteine is required for HMGB1 binding to Toll-like receptor 4 and activation of macrophage cytokine release".Proceedings of the National Academy of Sciences of the United States of America.107 (26):11942–7.Bibcode:2010PNAS..10711942Y.doi:10.1073/pnas.1003893107.PMC 2900689.PMID 20547845.
  11. ^Yang H, Tracey KJ (2010)."Targeting HMGB1 in inflammation".Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms.1799 (1–2):149–56.doi:10.1016/j.bbagrm.2009.11.019.PMC 4533842.PMID 19948257.
  12. ^abPazzaglia S, Pioli C (2019)."Multifaceted Role of PARP-1 in DNA Repair and Inflammation: Pathological and Therapeutic Implications in Cancer and Non-Cancer Diseases".Cells.9 (1): 41.doi:10.3390/cells9010041.PMC 7017201.PMID 31877876.
  13. ^Fagone P, Shedlock DJ, Bao H, Kawalekar OU, Yan J, Gupta D, Morrow MP, Patel A,Kobinger GP, Muthumani K, Weiner DB (November 2011)."Molecular adjuvant HMGB1 enhances anti-influenza immunity during DNA vaccination".Gene Therapy.18 (11):1070–7.doi:10.1038/gt.2011.59.PMC 4141626.PMID 21544096.
  14. ^Curtin JF, Liu N, Candolfi M, Xiong W, Assi H, Yagiz K, Edwards MR, Michelsen KS, Kroeger KM, Liu C, Muhammad AK, Clark MC, Arditi M, Comin-Anduix B, Ribas A, Lowenstein PR, Castro MG (January 2009)."HMGB1 mediates endogenous TLR2 activation and brain tumor regression".PLOS Medicine.6 (1): e10.doi:10.1371/journal.pmed.1000010.PMC 2621261.PMID 19143470.
  15. ^Imamura T, Izumi H, Nagatani G, Ise T, Nomoto M, Iwamoto Y, Kohno K (March 2001)."Interaction with p53 enhances binding of cisplatin-modified DNA by high mobility group 1 protein".The Journal of Biological Chemistry.276 (10):7534–40.doi:10.1074/jbc.M008143200.PMID 11106654.
  16. ^Dintilhac A, Bernués J (March 2002)."HMGB1 interacts with many apparently unrelated proteins by recognizing short amino acid sequences".The Journal of Biological Chemistry.277 (9):7021–8.doi:10.1074/jbc.M108417200.hdl:10261/112516.PMID 11748221.
  17. ^Sims GP, Rowe DC, Rietdijk ST, Herbst R, Coyle AJ (2010). "HMGB1 and RAGE in inflammation and cancer".Annual Review of Immunology.28:367–88.doi:10.1146/annurev.immunol.021908.132603.PMID 20192808.
  18. ^Ibrahim ZA, Armour CL, Phipps S, Sukkar MB (December 2013). "RAGE and TLRs: relatives, friends or neighbours?".Molecular Immunology.56 (4):739–44.doi:10.1016/j.molimm.2013.07.008.PMID 23954397.
  19. ^Park JS, Gamboni-Robertson F, He Q, Svetkauskaite D, Kim JY, Strassheim D, Sohn JW, Yamada S, Maruyama I, Banerjee A, Ishizaka A, Abraham E (March 2006). "High mobility group box 1 protein interacts with multiple Toll-like receptors".American Journal of Physiology. Cell Physiology.290 (3): C917-24.doi:10.1152/ajpcell.00401.2005.PMID 16267105.S2CID 21350171.
  20. ^Bianchi ME (September 2009)."HMGB1 loves company".Journal of Leukocyte Biology.86 (3):573–6.doi:10.1189/jlb.1008585.PMID 19414536.
  21. ^Hreggvidsdóttir HS, Lundberg AM, Aveberger AC, Klevenvall L, Andersson U, Harris HE (March 2012)."High mobility group box protein 1 (HMGB1)-partner molecule complexes enhance cytokine production by signaling through the partner molecule receptor".Molecular Medicine.18 (2):224–30.doi:10.2119/molmed.2011.00327.PMC 3320135.PMID 22076468.
  22. ^Lotze MT, DeMarco RA (December 2003). "Dealing with death: HMGB1 as a novel target for cancer therapy".Current Opinion in Investigational Drugs.4 (12):1405–1409.PMID 14763124.
  23. ^Andersson U, Ottestad W, Tracey KJ (May 2020)."Extracellular HMGB1: a therapeutic target in severe pulmonary inflammation including COVID-19?".Molecular Medicine.26 (1) 42.doi:10.1186/s10020-020-00172-4.PMC 7203545.PMID 32380958.
  24. ^Ryan FJ, Hope CM, Masavuli MG, Lynn MA, Mekonnen ZA, Yeow AE, et al. (January 2022)."Long-term perturbation of the peripheral immune system months after SARS-CoV-2 infection".BMC Medicine.20 (1) 26.doi:10.1186/s12916-021-02228-6.PMC 8758383.PMID 35027067.
  25. ^abIto H, Fujita K, Tagawa K, Chen X, Homma H, Sasabe T, Shimizu J, Shimizu S, Tamura T, Muramatsu S, Okazawa H (January 2015)."HMGB1 facilitates repair of mitochondrial DNA damage and extends the lifespan of mutant ataxin-1 knock-in mice".EMBO Molecular Medicine.7 (1):78–101.doi:10.15252/emmm.201404392.PMC 4309669.PMID 25510912.
  26. ^Makris G, Chouliaras G, Apostolakou F, Papageorgiou C, Chrousos G, Papassotiriou I, Pervanidou P (2021)."Increased serum concentrations of high mobility group box 1 (HMGB1) protein in children with Autism Spectrum Disorder".Children.8 (6): 478.doi:10.3390/children8060478.PMC 8228126.PMID 34198762.
  27. ^Makris G, Chouliaras G, Apostolakou F, Papageorgiou C, Chrousos G, Papassotiriou I, Pervanidou P (2021)."Increased serum concentrations of high mobility group box 1 (HMGB1) protein in children with Autism Spectrum Disorder".Children.8 (6): 478.doi:10.3390/children8060478.PMC 8228126.PMID 34198762.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1aab: NMR STRUCTURE OF RAT HMG1 HMGA FRAGMENT
    1aab: NMR STRUCTURE OF RAT HMG1 HMGA FRAGMENT
  • 1ckt: CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX
    1ckt: CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX
  • 1hme: STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
    1hme: STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
  • 1hmf: STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
    1hmf: STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
  • 1hsm: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
    1hsm: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
  • 1hsn: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
    1hsn: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
  • 1j3x: Solution structure of the N-terminal domain of the HMGB2
    1j3x: Solution structure of the N-terminal domain of the HMGB2
  • 1nhm: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
    1nhm: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
  • 1nhn: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
    1nhn: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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