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HLF (gene)

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

HLF
Identifiers
AliasesHLF, PAR bZIP transcription factor, HLF transcription factor, PAR bZIP family member
External IDsOMIM:142385;MGI:96108;HomoloGene:31074;GeneCards:HLF;OMA:HLF - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for HLF
Genomic location for HLF
Band17q22Start55,264,960bp[1]
End55,325,187bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for HLF
Genomic location for HLF
Band11 C|11 55.03 cMStart90,227,362bp[2]
End90,281,721bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • orbitofrontal cortex

  • Brodmann area 46

  • superior frontal gyrus

  • prefrontal cortex

  • middle temporal gyrus

  • postcentral gyrus

  • lateral nuclear group of thalamus

  • Brodmann area 23

  • Brodmann area 9
Top expressed in
  • lateral geniculate nucleus

  • medial dorsal nucleus

  • inferior colliculi

  • medial geniculate nucleus

  • primary motor cortex

  • olfactory tubercle

  • mammillary body

  • pontine nuclei

  • median eminence

  • vestibular membrane of cochlear duct
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3131

217082

Ensembl

ENSG00000108924

ENSMUSG00000003949

UniProt

Q16534

Q8BW74

RefSeq (mRNA)

NM_002126
NM_001330375

NM_172563

RefSeq (protein)

NP_001317304
NP_002117

NP_766151
NP_001390914
NP_001390915
NP_001390917
NP_001390918

NP_001390920
NP_001390922
NP_001390924
NP_001390926

Location (UCSC)Chr 17: 55.26 – 55.33 MbChr 11: 90.23 – 90.28 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Hepatic leukemia factor is aprotein that in humans is encoded by theHLFgene.[5][6]

Function

[edit]

This gene encodes a member of theproline andacidic-rich (PAR) protein family, a subset of the bZIP transcription factors. The encoded protein forms homodimers or heterodimers with other PAR family members and binds sequence-specific promoter elements to activate transcription. Chromosomal translocations fusing portions of this gene with the E2A gene cause a subset of childhood B-lineage acute lymphoid leukemias. Alternatively spliced transcript variants have been described, but their biological validity has not been determined.[6]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000108924Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000003949Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Inaba T, Roberts WM, Shapiro LH, Jolly KW, Raimondi SC, Smith SD, Look AT (July 1992). "Fusion of the leucine zipper gene HLF to the E2A gene in human acute B-lineage leukemia".Science.257 (5069):531–4.Bibcode:1992Sci...257..531I.doi:10.1126/science.1386162.PMID 1386162.
  6. ^ab"Entrez Gene: HLF hepatic leukemia factor".

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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