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Guanine

From Wikipedia, the free encyclopedia
Chemical compound of DNA and RNA
Not to be confused withGuanosine,Guanidine,Guanfacine,Guanamine, orGuanín.
Guanine
Names
Preferred IUPAC name
2-Amino-1,9-dihydro-6H-purin-6-one
Other names
2-amino-6-hydroxypurine,
2-aminohypoxanthine,
Guanine
Identifiers
3D model (JSmol)
147911
ChEBI
ChEMBL
ChemSpider
DrugBank
ECHA InfoCard100.000.727Edit this at Wikidata
EC Number
  • 200-799-8
431879
KEGG
RTECS number
  • MF8260000
UNII
  • InChI=1S/C5H5N5O/c6-5-9-3-2(4(11)10-5)7-1-8-3/h1H,(H4,6,7,8,9,10,11) checkY
    Key: UYTPUPDQBNUYGX-UHFFFAOYSA-N checkY
  • InChI=1/C5H5N5O/c6-5-9-3-2(4(11)10-5)7-1-8-3/h1H,(H4,6,7,8,9,10,11)
    Key: UYTPUPDQBNUYGX-UHFFFAOYAE
  • keto form: N1C(N)=NC=2NC=NC2C1=O
  • enol form: OC1=C2N=CNC2=NC(=N1)N
Properties
C5H5N5O
Molar mass151.13 g/mol
AppearanceWhite amorphous solid.
Density2.200 g/cm3 (calculated)
Melting point360 °C (680 °F; 633 K) decomposes
Boiling pointSublimes
Insoluble.
Acidity (pKa)3.3 (amide), 9.2 (secondary), 12.3 (primary)[1]
Hazards
Occupational safety and health (OHS/OSH):
Main hazards
Irritant
NFPA 704 (fire diamond)
Flash pointNon-flammable
Related compounds
Related compounds
Cytosine;Adenine;Thymine;Uracil
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
checkY verify (what is checkY☒N ?)
Chemical compound

Guanine (/ˈɡwɑːnn/ ) (symbolG orGua) is one of the four mainnucleotide bases found in thenucleic acidsDNA andRNA, the others beingadenine,cytosine, andthymine (uracil in RNA). InDNA, guanine is paired with cytosine. The guaninenucleoside is calledguanosine.

With the formula C5H5N5O, guanine is a derivative ofpurine, consisting of a fusedpyrimidine-imidazole ring system with conjugated double bonds. This unsaturated arrangement means thebicyclic molecule is planar.

Properties

[edit]

Guanine, along with adenine and cytosine, is present in both DNA and RNA, whereas thymine is usually seen only in DNA, and uracil only in RNA.

Guanine has multipletautomeric forms. For both the imidazole and pyrimidine rings, the proton can reside on either of the ring nitrogens. But a single tautomeric form dominates in nucleoside or nucleotide versions of guanine.[2]

Guanine binds to cytosine through threehydrogen bonds. In cytosine, the amino group acts as the hydrogen bond donor and the C-2 carbonyl and the N-3 amine as the hydrogen-bond acceptors. Guanine has the C-6 carbonyl group that acts as the hydrogen bond acceptor, while a group at N-1 and the amino group at C-2 act as the hydrogen bond donors.[citation needed]

Guanine
Cytosine and guanine with the direction of hydrogen bonding indicated (arrow points positive to negative charge)

Guanine can behydrolyzed with strong acid toglycine,ammonia,carbon dioxide, andcarbon monoxide. First, guanine getsdeaminated to becomexanthine.[3] Guanine oxidizes more readily than adenine, the other purine-derivative base in DNA. Its high melting point of 350 °C reflects the intermolecular hydrogen bonding between the oxo and amino groups in the molecules in the crystal. Because of this intermolecular bonding, guanine is relatively insoluble in water, but it is soluble in dilute acids and bases.

History

[edit]

The first isolation of guanine was reported in 1844 by the German chemistJulius Bodo Unger [de] (1819–1885), who obtained it as a mineral formed from the excreta of sea birds, which is known asguano and which was used as a source of fertilizer; guanine was named in 1846.[4] Between 1882 and 1906,Emil Fischer determined the structure and also showed thaturic acid can be converted to guanine.[5]

Synthesis

[edit]

AFischer–Tropsch synthesis can be used to form guanine, along withadenine,uracil, andthymine. Heating an equimolar gas mixture of CO, H2, and NH3 to 700 °C for 15 to 24 minutes, followed by quick cooling and then sustained reheating to 100 to 200 °C for 16 to 44 hours with an alumina catalyst, yielded guanine and uracil:

10CO + H2 + 10NH3 → 2C5H8N5O (guanine) + 8H2O

Trace amounts of guanine form by thepolymerization ofammonium cyanide (NH
4
CN
). Two experiments conducted by Levy et al. showed that heating 10 mol·L−1NH
4
CN
at 80 °C for 24 hours gave a yield of 0.0007%, while using 0.1 mol·L−1NH
4
CN
frozen at −20 °C for 25 years gave a 0.0035% yield. These results indicate guanine could arise in frozen regions of the primitive earth. In 1984, Yuasa reported a 0.00017% yield of guanine after the electrical discharge ofNH
3
,CH
4
,C
2
H
6
, and 50 mL of water, followed by a subsequent acid hydrolysis. However, it is unknown whether the presence of guanine was not simply a resultant contaminant of the reaction.[6]

10NH3 + 2CH4 + 4C2H6 + 2H2O → 2C5H8N5O (guanine) + 25H2

Another possible abiotic route was explored by quenching a 90% N2–10%CO–H2O gas mixture high-temperature plasma.[7]

Traube's synthesis involves heating4-hydroxy-2,4,5-triaminopyrimidine withformic acid for several hours.[8]Traube purine synthesis

Biosynthesis

[edit]

Guanine is not primarily synthesizedde novo.[clarification needed] Instead, it is split from the more complex moleculeguanosine by the enzymeguanosine phosphorylase:

guanosine + phosphate{\displaystyle \rightleftharpoons } guanine + alpha-D-ribose 1-phosphate

Guanine can be synthesized de novo, with the rate-limiting enzyme ofinosine monophosphate dehydrogenase.

Other occurrences and biological uses

[edit]

The word guanine derives from the Spanish loanwordguano ('bird/bat droppings'), which itself is from theQuechua wordwanu, meaning 'dung'. As theOxford English Dictionary notes, guanine is "A white amorphous substance obtained abundantly from guano, forming a constituent of the excrement of birds".[9]

In 1656 in Paris, a Mr. Jaquin extracted from the scales of the fishAlburnus alburnus so-called "pearl essence",[10] which is crystalline guanine.[11] In the cosmetics industry, crystalline guanine is used as an additive to various products (e.g., shampoos), where it provides a pearlyiridescent effect. It is also used in metallic paints and simulated pearls and plastics. It provides shimmering luster to eye shadow andnail polish. Facial treatments using the droppings, or guano, from Japanese nightingales have been used in Japan and elsewhere, because the guanine in thedroppings makes the skin look paler.[12] Guanine crystals are rhombic platelets composed of multiple transparent layers, but they have a highindex of refraction that partially reflects and transmits light from layer to layer, thus producing a pearly luster. It can be applied by spray, painting, or dipping. It may irritate the eyes. Its alternatives aremica, faux pearl (from ground shells),[13] andaluminium andbronze particles.

Guanine has a very wide variety of biological uses that include a range of functions ranging in both complexity and versatility. These include camouflage, display, and vision among other purposes.[14]

Spiders, scorpions, and some amphibians convert ammonia, as a product of protein metabolism in the cells, to guanine, as it can be excreted with minimal water loss.[14]

Guanine is also found in specialized skin cells of fish callediridocytes (e.g., thesturgeon),[15][14] as well as being present in the reflective deposits of the eyes ofdeep-sea fish and somereptiles, such ascrocodiles andchameleons.[15]

On 8 August 2011, a report, based onNASA studies withmeteorites found on Earth, was published suggesting building blocks of DNA and RNA (guanine,adenine and relatedorganic molecules) may have been formed extra-terrestrially in outer space.[16][17][18]

See also

[edit]

References

[edit]
  1. ^Dawson, R.M.C., et al.,Data for Biochemical Research, Oxford, Clarendon Press, 1959.
  2. ^Saenger, W. (1984).Principles of Nucleic Acid Structure. Springer Advanced Texts in Chemistry. Springer Science & Business Media. p. 112.doi:10.1007/978-1-4612-5190-3.ISBN 978-0-387-90761-1.
  3. ^Angstadt, Carol N (1997)."Purines and pyrimidines".utah.edu. Retrieved2024-11-20.
  4. ^Guanine was first isolated in 1844 by Julius Bodo Unger (1819–1885), a student ofHeinrich Gustav Magnus. See:
    • Paul O. P. Ts'o,Basic Principles in Nucleic Acid Chemistry, vol. 1 (New York, New York: Academic Press, 1974),page 7.
    • Magnus (1844)"Ueber das Vorkommen von Xanthicoxyd im Guano" (On the occurrence of xanthic oxide in guano),Annalen der Chemie und Pharmacie,51 : 395-397.
    • B. Unger (1846)"Bemerkungen zu obiger Notiz" (Comments on the above notice),Annalen der Chemie und Pharmacie,58 : 18-20. From page 20:" ... desshalb möchte ich den NamenGuanin vorschlagen, welcher an seine Herkunft erinnert." ( ... therefore I would like to suggest the nameguanine, which is reminiscent of its origin.)
    • B. Unger (1846)"Das Guanin und seine Verbindungen" (Guanine and its compounds),Annalen der Chemie und Pharmacie,59 : 58-68.
  5. ^"Emil Fischer - Biographical".
  6. ^Levy, Matthew; Stanley L. Miller; John Oró (August 1999). "Production of Guanine from NH4CN Polymerizations".Journal of Molecular Evolution.49 (2):165–8.Bibcode:1999JMolE..49..165L.doi:10.1007/PL00006539.PMID 10441668.S2CID 32194418. - quotes the Yuasa paper and cites the possibility of there being a contaminant in the reaction.
  7. ^Miyakawa, S; Murasawa, K.; Kobayashi, K.; Sawaoka, AB. (December 2000). "Abiotic synthesis of guanine with high-temperature plasma".Orig Life Evol Biosph.30 (6):557–66.Bibcode:2000OLEB...30..557M.doi:10.1023/A:1026587607264.PMID 11196576.S2CID 25417484.
  8. ^Traube, Wilhelm; Schottlander, Friedrich; Goslich, Carl; Peter, Robert; Meyer, F. A.; Schlüter, Heinrich; Steinbach, Wilhelm; Bredow, Karl (1923). "Über Ortho-diamino-pyrimidine und ihre Überführung in Purine" [o-Diaminopyrimidines and their transformation into purines].Justus Liebigs Annalen der Chemie.432: 266-96.doi:10.1002/jlac.19234320111.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  9. ^OED. "guanine" and also "guano".
  10. ^Johann Rudolf von Wagner, Ferdinand Fischer, and L. Gautier,Traité de chimie industrielle (Treatise on industrial chemistry), 4th ed., (Paris, France: Masson & Co., 1903), vol. 2,pp. 64–65.
  11. ^In 1861 the French chemistCharles-Louis Barreswil (1817–1870) found that "pearl essence" was guanine. See: Barreswil (1861)"Sur le blanc d'ablette qui sert à la fabrication des perles fausses" (On the white of ablette that's used in making imitation pearls),Comptes rendus,53 : 246.
  12. ^Whitworth, Melissa (2008-10-16)."Geisha facial, the 'latest beauty secret' of Victoria Beckham, brought to the masses".Lifestyle. Telegraph. Archived fromthe original on 2008-12-05. Retrieved2008-11-20.
  13. ^"How Pearls are Made...Faux, Fake, Imitation,Simulated".www.karipearls.com.
  14. ^abcGur, Dvir; Palmer, Benjamin A.; Weiner, Steve; Addadi, Lia (2017). "Light manipulation by guanine crystals in organisms: biogenic scatterers, mirrors, multilayer reflectors and photonic crystals".Advanced Functional Materials.27 (6) 1603514.doi:10.1002/adfm.201603514.S2CID 136383728.
  15. ^abFox, D.L. (1979).Biochromy, natural coloration of living things. University of California Press.ISBN 978-0-520-03699-4.
  16. ^Callahan; Smith, K.E.; Cleaves, H.J.; Ruzica, J.; Stern, J.C.; Glavin, D.P.; House, C.H.; Dworkin, J.P. (11 August 2011)."Carbonaceous meteorites contain a wide range of extraterrestrial nucleobases".Proceedings of the National Academy of Sciences of the United States of America.108 (34).PNAS:13995–8.Bibcode:2011PNAS..10813995C.doi:10.1073/pnas.1106493108.PMC 3161613.PMID 21836052.
  17. ^Steigerwald, John (8 August 2011)."NASA Researchers: DNA Building Blocks Can Be Made in Space".NASA. Archived fromthe original on 2015-06-23. Retrieved2011-08-10.
  18. ^"DNA Building Blocks Can Be Made in Space, NASA Evidence Suggests".ScienceDaily. 9 August 2011. Retrieved2011-08-09.

External links

[edit]
Wikimedia Commons has media related toGuanine.
Nucleic acid constituents
Nucleobase
Nucleoside
Ribonucleoside
Deoxyribonucleoside
Nucleotide
(Nucleoside monophosphate)
Ribonucleotide
Deoxyribonucleotide
Cyclic nucleotide
Nucleoside diphosphate
Nucleoside triphosphate
Receptor
(ligands)
P0 (adenine)
P1
(adenosine)
P2
(nucleotide)
P2X
(ATPTooltip Adenosine triphosphate)
P2Y
Transporter
(blockers)
CNTsTooltip Concentrative nucleoside transporters
ENTsTooltip Equilibrative nucleoside transporters
PMATTooltip Plasma membrane monoamine transporter
Enzyme
(inhibitors)
XOTooltip Xanthine oxidase
Others
Others
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