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GTF2E1

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From Wikipedia, the free encyclopedia

Human protein-coding gene

GTF2E1

Available structures

PDB

Ortholog search:PDBe RCSB

List of PDB id codes
1VD4,2JTX,2RNQ,2RNR,5IY9,5IYC,5IYD,5IY7,5IYA,5IY6,5IYB,5IY8

Identifiers

Aliases

GTF2E1, FE, TF2E1, TFIIE-A, general transcription factor IIE subunit 1

External IDs

OMIM:189962;MGI:1921447;HomoloGene:38062;GeneCards:GTF2E1;OMA:GTF2E1 - orthologs

Gene location (Human)

Chr.	Chromosome 3 (human)^[1]

Band	3q13.33	Start	120,742,637bp^[1]
Band	3q13.33	End	120,783,069bp^[1]

Gene location (Mouse)

Chr.	Chromosome 16 (mouse)^[2]

Band	16\|16 B3	Start	37,330,152bp^[2]
Band	16\|16 B3	End	37,360,151bp^[2]

RNA expression pattern

Bgee

Human

Mouse (ortholog)

Top expressed in

oocyte

secondary oocyte

testicle

gonad

periodontal fiber

sperm

monocyte

stromal cell of endometrium

right adrenal cortex

islet of Langerhans

Top expressed in

hand

superior cervical ganglion

otic vesicle

endocardial cushion

primitive streak

medial ganglionic eminence

abdominal wall

atrioventricular valve

iris

trigeminal ganglion

More reference expression data

BioGPS

n/a

Gene ontology
Molecular function	metal ion binding sequence-specific DNA binding protein binding RNA polymerase II complex binding TFIIH-class transcription factor complex binding RNA polymerase II general transcription initiation factor activity
Cellular component	nucleus nucleoplasm transcription factor TFIID complex cytosol transcription preinitiation complex transcription factor TFIIE complex
Biological process	regulation of transcription, DNA-templated transcription by RNA polymerase II transcription, DNA-templated transcription initiation from RNA polymerase II promoter snRNA transcription by RNA polymerase II viral process transcription open complex formation at RNA polymerase II promoter
Sources:Amigo /QuickGO

Orthologs

Species

Human

Mouse

Entrez


2960


74197

Ensembl


ENSG00000153767


ENSMUSG00000022828

UniProt


P29083


Q9D0D5

RefSeq (mRNA)


NM_005513


NM_028812 NM_001355727

RefSeq (protein)


NP_005504


NP_083088 NP_001342656

Location (UCSC)

Chr 3: 120.74 – 120.78 Mb

Chr 16: 37.33 – 37.36 Mb

PubMed search

^[3]

^[4]

Wikidata

View/Edit Human

View/Edit Mouse

General transcription factor IIE subunit 1 (GTF2E1), also known astranscription initiation factor IIE subunit alpha (TFIIE-alpha), is aprotein that in humans is encoded by theGTF2E1gene.^[5]

References

[edit]

^^a ^b ^cGRCh38: Ensembl release 89: ENSG00000153767 –Ensembl, May 2017
^^a ^b ^cGRCm38: Ensembl release 89: ENSMUSG00000022828 –Ensembl, May 2017
^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
^"Entrez Gene: general transcription factor IIE".

Jeronimo C, Forget D, Bouchard A, Li Q, Chua G, Poitras C, Thérien C, Bergeron D, Bourassa S, Greenblatt J, Chabot B, Poirier GG, Hughes TR, Blanchette M, Price DH, Coulombe B (July 2007)."Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme".Molecular Cell.27 (2):262–74.doi:10.1016/j.molcel.2007.06.027.PMC 4498903.PMID 17643375.
Langelier MF, Forget D, Rojas A, Porlier Y, Burton ZF, Coulombe B (October 2001)."Structural and functional interactions of transcription factor (TF) IIA with TFIIE and TFIIF in transcription initiation by RNA polymerase II".The Journal of Biological Chemistry.276 (42):38652–7.doi:10.1074/jbc.M106422200.PMC 4492724.PMID 11509574.
Vega A, Salas A, Milne RL, Carracedo B, Ribas G, Ruibal A, de León AC, González-Hernández A, Benítez J, Carracedo A (January 2009). "Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study".Gynecologic Oncology.112 (1):210–4.doi:10.1016/j.ygyno.2008.09.012.PMID 18950845.
Yamamoto S, Watanabe Y, van der Spek PJ, Watanabe T, Fujimoto H, Hanaoka F, Ohkuma Y (January 2001)."Studies of nematode TFIIE function reveal a link between Ser-5 phosphorylation of RNA polymerase II and the transition from transcription initiation to elongation".Molecular and Cellular Biology.21 (1):1–15.doi:10.1128/MCB.21.1.1-15.2001.PMC 86563.PMID 11113176.
Watanabe T, Hayashi K, Tanaka A, Furumoto T, Hanaoka F, Ohkuma Y (April 2003)."The carboxy terminus of the small subunit of TFIIE regulates the transition from transcription initiation to elongation by RNA polymerase II".Molecular and Cellular Biology.23 (8):2914–26.doi:10.1128/mcb.23.8.2914-2926.2003.PMC 152561.PMID 12665589.
Jawhari A, Uhring M, De Carlo S, Crucifix C, Tocchini-Valentini G, Moras D, Schultz P, Poterszman A (May 2006)."Structure and oligomeric state of human transcription factor TFIIE".EMBO Reports.7 (5):500–5.doi:10.1038/sj.embor.7400663.PMC 1479554.PMID 16547462.
Orphanides G, Lagrange T, Reinberg D (November 1996)."The general transcription factors of RNA polymerase II".Genes & Development.10 (21):2657–83.doi:10.1101/gad.10.21.2657.PMID 8946909.
Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S (January 2006)."Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes".Genome Research.16 (1):55–65.doi:10.1101/gr.4039406.PMC 1356129.PMID 16344560.
Archambault J, Pan G, Dahmus GK, Cartier M, Marshall N, Zhang S, Dahmus ME, Greenblatt J (October 1998)."FCP1, the RAP74-interacting subunit of a human protein phosphatase that dephosphorylates the carboxyl-terminal domain of RNA polymerase IIO".The Journal of Biological Chemistry.273 (42):27593–601.doi:10.1074/jbc.273.42.27593.PMID 9765293.
Kim TK, Ebright RH, Reinberg D (May 2000). "Mechanism of ATP-dependent promoter melting by transcription factor IIH".Science.288 (5470):1418–22.Bibcode:2000Sci...288.1418K.doi:10.1126/science.288.5470.1418.PMID 10827951.
Ikeda K, Halle JP, Stelzer G, Meisterernst M, Kawakami K (January 1998)."Involvement of negative cofactor NC2 in active repression by zinc finger-homeodomain transcription factor AREB6".Molecular and Cellular Biology.18 (1):10–8.doi:10.1128/mcb.18.1.10.PMC 121442.PMID 9418848.
Yu X, Li P, Roeder RG, Wang Z (July 2001)."Inhibition of androgen receptor-mediated transcription by amino-terminal enhancer of split".Molecular and Cellular Biology.21 (14):4614–25.doi:10.1128/MCB.21.14.4614-4625.2001.PMC 87125.PMID 11416139.
Di Lello P, Miller Jenkins LM, Mas C, Langlois C, Malitskaya E, Fradet-Turcotte A, Archambault J, Legault P, Omichinski JG (January 2008)."p53 and TFIIEalpha share a common binding site on the Tfb1/p62 subunit of TFIIH".Proceedings of the National Academy of Sciences of the United States of America.105 (1):106–11.Bibcode:2008PNAS..105..106D.doi:10.1073/pnas.0707892105.PMC 2224167.PMID 18160537.
Liu L, Ishihara K, Ichimura T, Fujita N, Hino S, Tomita S, Watanabe S, Saitoh N, Ito T, Nakao M (February 2009)."MCAF1/AM is involved in Sp1-mediated maintenance of cancer-associated telomerase activity".The Journal of Biological Chemistry.284 (8):5165–74.doi:10.1074/jbc.M807098200.PMID 19106100.
Okamoto T, Yamamoto S, Watanabe Y, Ohta T, Hanaoka F, Roeder RG, Ohkuma Y (July 1998)."Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIEbeta subunit".The Journal of Biological Chemistry.273 (31):19866–76.doi:10.1074/jbc.273.31.19866.PMID 9677423.
Okuda M, Tanaka A, Arai Y, Satoh M, Okamura H, Nagadoi A, Hanaoka F, Ohkuma Y, Nishimura Y (December 2004)."A novel zinc finger structure in the large subunit of human general transcription factor TFIIE".The Journal of Biological Chemistry.279 (49):51395–403.doi:10.1074/jbc.M404722200.PMID 15385556.
Okuda M, Tanaka A, Satoh M, Mizuta S, Takazawa M, Ohkuma Y, Nishimura Y (April 2008)."Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH".The EMBO Journal.27 (7):1161–71.doi:10.1038/emboj.2008.47.PMC 2275666.PMID 18354501.
Fraser RA, Heard DJ, Adam S, Lavigne AC, Le Douarin B, Tora L, Losson R, Rochette-Egly C, Chambon P (June 1998)."The putative cofactor TIF1alpha is a protein kinase that is hyperphosphorylated upon interaction with liganded nuclear receptors".The Journal of Biological Chemistry.273 (26):16199–204.doi:10.1074/jbc.273.26.16199.PMID 9632676.
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, Tegnér J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R, Kitazume Y, Kawai J, Hume DA, Ideker T, Hayashizaki Y (March 2010)."An atlas of combinatorial transcriptional regulation in mouse and man".Cell.140 (5):744–52.doi:10.1016/j.cell.2010.01.044.PMC 2836267.PMID 20211142.

v t e PDB gallery
1vd4: Solution structure of the zinc finger domain of TFIIE alpha 2rnr: Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain

Transcription factors andintracellular receptors

(1) Basic domains

(1.1) Basicleucine zipper (bZIP)

Activating transcription factor
- AATF
- 1
- 2
- 3
- 4
- 5
- 6
- 7
AP-1
- c-Fos
- FOSB
- FOSL1
- FOSL2
- JDP2
- c-Jun
- JUNB
- JunD
BACH
- 1
- 2
BATF
BLZF1
C/EBP
- α
- β
- γ
- δ
- ε
- ζ
CREB
- 1
- 3
- L1
CREM
DBP
DDIT3
GABPA
GCN4
HLF
MAF
- B
- sMaf
  - F
  - G
  - K
NFE
- 2
- L1
- L2
- L3
NFIL3
NRL
NRF
- 1
- 2
- 3
XBP1

(1.2) Basic helix-loop-helix (bHLH)

Group A	AS-C ASCL1 ASCL2 ATOH1 HAND 1 2 MESP2 Myogenic regulatory factors MyoD Myogenin MYF5 MYF6 NeuroD 1 2 Neurogenins 1 2 3 OLIG 1 2 Paraxis TCF15 Scleraxis SLC LYL1 TAL 1 2 Twist
Group B	FIGLA Myc c-Myc l-Myc n-Myc MXD4 TCF4
Group C bHLH-PAS	AhR AHRR ARNT ARNTL ARNTL2 CLOCK HIF 1A EPAS1 3A NPAS 1 2 3 PER 1 2 3 Period SIM 1 2
Group D	BHLH 2 3 9 Pho4 ID 1 2 3 4
Group E	HES 1 2 3 4 5 6 7 HEY 1 2 L
Group F bHLH-COE	EBF1

(1.3)bHLH-ZIP

(1.4) NF-1

NFI
- A
- B
- C
- X
SMAD
- R-SMAD
  - 1
  - 2
  - 3
  - 5
  - 9
- I-SMAD
  - 6
  - 7
- 4)

(1.5) RF-X

RFX
- 1
- 2
- 3
- 4
- 5
- 6
- ANK

(1.6) Basic helix-span-helix (bHSH)

AP-2
- α
- β
- γ
- δ
- ε

(2)Zinc finger DNA-binding domains

(2.1)Nuclear receptor(Cys₄)

subfamily 1	Thyroid hormone α β CAR FXR LXR α β PPAR α β/δ γ PXR RAR α β γ ROR α β γ Rev-ErbA α β VDR
subfamily 2	COUP-TF (I II Ear-2 HNF4 α γ PNR RXR α β γ Testicular receptor 2 4 TLX
subfamily 3	Steroid hormone Androgen Estrogen α β Glucocorticoid Mineralocorticoid Progesterone Estrogen related α β γ
subfamily 4	NUR NGFIB NOR1 NURR1
subfamily 5	LRH-1 SF1
subfamily 6	GCNF
subfamily 0	DAX1 SHP

(2.2) Other Cys₄

GATA
- 1
- 2
- 3
- 4
- 5
- 6
MTA
- 1
- 2
- 3
TRPS1

(2.3) Cys₂His₂

General transcription factors
- TFIIA
- TFIIB
- TFIID
- TFIIE
  - 1
  - 2
- TFIIF
- 1
- 2
  - TFIIH
  - 1
  - 2
  - 4
  - 2I
  - 3A
  - 3C1
  - 3C2

ATBF1
BCL
- 6
- 11A
- 11B
CTCF
E4F1
EGR
- 1
- 2
- 3
- 4
ERV3
GFI1
GLI family
- 1
- 2
- 3
- REST
- S1
- S2
- YY1
HIC
- 1
- 2
HIVEP
- 1
- 2
- 3
IKZF
- 1
- 2
- 3
ILF
- 2
- 3
Sp/KLF family
- KLF
  - 1
  - 2
  - 3
  - 4
  - 5
  - 6
  - 7
  - 8
  - 9
  - 10
  - 11
  - 12
  - 13
  - 14
  - 15
  - 17
- SP
  - 1
  - 2
  - 4
  - 7
  - 8
MTF1
MYT1
OSR1
PRDM9
SALL
- 1
- 2
- 3
- 4
TSHZ3
WT1
Zbtb7
- 7A
- 7B
ZBTB
- 11
- 16
- 17
- 20
- 21
- 32
- 33
- 40
zinc finger
- 3
- 7
- 9
- 10
- 19
- 22
- 24
- 33B
- 34
- 35
- 41
- 43
- 44
- 51
- 74
- 143
- 146
- 148
- 165
- 202
- 217
- 219
- 238
- 239
- 259
- 267
- 268
- 281
- 300
- 318
- 330
- 346
- 350
- 365
- 366
- 384
- 423
- 451
- 452
- 471
- 593
- 638
- 644
- 649
- 655
- 804A

(2.4) Cys₆

HIVEP1

(2.5) Alternating composition

AIRE
DIDO1
GRLF1
ING
- 1
- 2
- 4
JARID
- 1A
- 1B
- 1C
- 1D
- 2
JMJD1B

(2.6) WRKY

WRKY

(3)Helix-turn-helixdomains

(3.1)Homeodomain

Antennapedia
ANTP class

protoHOX Hox-like	ParaHox Gsx 1 2 Xlox PDX1 Cdx 1 2 4 extended Hox:Evx1 Evx2 MEOX1 MEOX2 Homeobox A1 A2 A3 A4 A5 A7 A9 A10 A11 A13 B1 B2 B3 B4 B5 B6 B7 B8 B9 B13 C4 C5 C6 C8 C9 C10 C11 C12 C13 D1 D3 D4 D8 D9 D10 D11 D12 D13 GBX1 GBX2 MNX1
metaHOX NK-like	BARHL1 BARHL2 BARX1 BARX2 BSX DBX 1 2 DLX 1 2 3 4 5 6 EMX 1 2 EN 1 2 HHEX HLX LBX1 LBX2 MSX 1 2 NANOG NKX 2-1 2-2 2-3 2-5 3-1 3-2 HMX1 HMX2 HMX3 6-1 6-2 NOTO TLX1 TLX2 TLX3 VAX1 VAX2

other

ARX
CRX
CUTL1
FHL
- 1
- 2
- 3
HESX1
HOPX
LMX
- 1A
- 1B
NOBOX
TALE
- IRX
  - 1
  - 2
  - 3
  - 4
  - 5
  - 6
  - MKX
- MEIS
  - 1
  - 2
- PBX
  - 1
  - 2
  - 3
- PKNOX
  - 1
  - 2
- SIX
  - 1
  - 2
  - 3
  - 4
  - 5
PHF
- 1
- 3
- 6
- 8
- 10
- 16
- 17
- 20
- 21A
POU domain
- PIT-1
- BRN-3:A
- B
- C
- Octamer transcription factor:1
- 2
- 3/4
- 6
- 7
- 11
SATB2
ZEB
- 1
- 2

(3.2) Paired box

PAX
- 1
- 2
- 3
- 4
- 5
- 6
- 7
- 8
- 9
PRRX
- 1
- 2
PROP1
PHOX
- 2A
- 2B
RAX
SHOX
SHOX2
VSX1
VSX2
Bicoid
- GSC
- BICD2
- OTX
  - 1
  - 2
- PITX
  - 1
  - 2
  - 3

(3.3)Fork head /winged helix

E2F
- 1
- 2
- 3
- 4
- 5
FOX proteins
- A1
- A2
- A3
- B1
- B2
- C1
- C2
- D1
- D2
- D3
- D4
- D4L1
- D4L3
- D4L4
- D4L5
- D4L6
- E1
- E3
- F1
- F2
- G1
- H1
- I1
- I2
- I3
- J1
- J2
- J3
- K1
- K2
- L1
- L2
- M1
- N1
- N2
- N3
- N4
- O1
- O3
- O4
- O6
- P1
- P2
- P3
- P4
- Q1
- R1
- R2
- S1

(3.4)Heat shock factors

HSF
- 1
- 2
- 4

(3.5) Tryptophan clusters

ELF
- 2
- 4
- 5
EHF
ELK
- 1
- 3
- 4
ERF
ETS
- 1
- 2
- ERG
- SPIB
ETV
- 1
- 4
- 5
- 6
FLI1
Interferon regulatory factors
- 1
- 2
- 3
- 4
- 5
- 6
- 7
- 8
MYB
MYBL2

(3.6) TEA domain

transcriptional enhancer factor
- 1
- 2
- 3
- 4

(4)β-Scaffold factors with minor groove contacts

(4.1)Rel homology region	NF-κB NFKB1 NFKB2 REL RELA RELB NFAT C1 C2 C3 C4 5
(4.2)STAT	STAT 1 2 3 4 5 6
(4.3) p53-like	p53 p63 p73 family p53 TP63 p73 TBX 1 2 3 5 19 21 22 TBR1 TBR2 TFT MYRF
(4.4)MADS box	Mef2 A B C D SRF
(4.6)TATA-binding proteins	TBP TBPL1
(4.7)High-mobility group	BBX HMGB 1 2 3 4 HMGN 1 2 3 4 HNF 1A 1B SOX 1 2 3 4 5 6 8 9 10 11 12 13 14 15 17 18 21 SRY SSRP1 TCF/LEF TCF 1 3 4 LEF1 TOX 1 2 3 4
(4.9) Grainyhead	TFCP2
(4.10) Cold-shock domain	CSDA YBX1
(4.11) Runt	CBF CBFA2T2 CBFA2T3 RUNX1 RUNX2 RUNX3 RUNX1T1

(0) Other transcription factors

(0.2) HMGI(Y)	HMGA 1 2 HBP1
(0.3)Pocket domain	Rb RBL1 RBL2
(0.5)AP-2/EREBP-related factors	Apetala 2 EREBP B3
(0.6) Miscellaneous	ARID 1A 1B 2 3A 3B 4A CAP IFI 16 35 MLL 2 3 T1 MNDA NFY A B C Rho/Sigma