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Filoviridae

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(Redirected fromFilovirus)
Family of viruses in the order Mononegavirales
Filoviridae
Ebolavirus structure and genome
Electron micrograph ofMarburg virus
Virus classificationEdit this classification
(unranked):Virus
Realm:Riboviria
Kingdom:Orthornavirae
Phylum:Negarnaviricota
Class:Monjiviricetes
Order:Mononegavirales
Family:Filoviridae
Genera

Filoviridae (/ˌflˈvɪrɪd/[1]) is afamily ofsingle-stranded negative-sense RNA viruses in theorderMononegavirales.[2] Two members of the family that are commonly known areEbola virus andMarburg virus. Both viruses, and some of their lesser known relatives, cause severe disease in humans and nonhumanprimates in the form ofviral hemorrhagic fevers.[3]

All filoviruses are classified by the US asselect agents,[4] by theWorld Health Organization as Risk Group 4 Pathogens (requiringBiosafety Level 4-equivalent containment),[5] by theNational Institutes of Health/National Institute of Allergy and Infectious Diseases as Category A Priority Pathogens,[6] and by theCenters for Disease Control and Prevention asCategory A Bioterrorism Agents,[7] and are listed as Biological Agents for Export Control by theAustralia Group.[8]

Use of term

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ThefamilyFiloviridae is avirological taxon that was defined in 1982[3] and emended in 1991,[9] 1998,[10] 2000,[11] 2005,[12] 2010[13] and 2011.[14] The family currently includes the sixvirusgeneraCuevavirus,Dianlovirus,Ebolavirus,Marburgvirus, Striavirus, andThamnovirus and is included in theorderMononegavirales.[13] The members of the family (i.e. the actual physical entities) are called filoviruses or filovirids.[13] The nameFiloviridae is derived from theLatinnounfilum (alluding to the filamentous morphology of filovirions) and thetaxonomicsuffix-viridae (which denotes a virus family).[3]

Note

[edit]

According to the rules for taxon naming established by theInternational Committee on Taxonomy of Viruses (ICTV), the nameFiloviridae is always to becapitalized,italicized, never abbreviated, and to be preceded by the word "family". The names of its members (filoviruses or filovirids) are to be written in lower case, are not italicized, and used withoutarticles.[13][14]

Life cycle

[edit]
Replication cycle of filoviruses and vectors
Replication cycle of filoviruses at and inside host cell

The filoviruslife cycle begins with virion attachment to specific cell-surfacereceptors, followed byfusion of the virion envelope with cellular membranes and the concomitant release of the virusnucleocapsid into thecytosol. The viralRNA-dependent RNA polymerase (RdRp, or RNA replicase) partially uncoats the nucleocapsid andtranscribes thegenes into positive-strandedmRNAs, which are thentranslated into structural and nonstructuralproteins. Filovirus RdRps bind to a singlepromoter located at the 3' end of the genome. Transcription either terminates after a gene or continues to the next gene downstream. This means that genes close to the 3' end of the genome are transcribed in the greatest abundance, whereas those toward the 5' end are least likely to be transcribed. The gene order is therefore a simple but effective form of transcriptional regulation. The most abundant protein produced is thenucleoprotein, whoseconcentration in the cell determines when the RdRp switches from gene transcription to genome replication. Replication results in full-length, positive-stranded antigenomes that are in turn transcribed into negative-stranded virus progeny genome copies. Newly synthesized structural proteins and genomes self-assemble and accumulate near the inside of thecell membrane. Virionsbud off from the cell, gaining their envelopes from the cellular membrane they bud from. The mature progeny particles then infect other cells to repeat the cycle.[12]

Family inclusion criteria

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Schematic representation of the filovirus genome organization.

A virus that fulfills the criteria for being a member of the orderMononegavirales is a member of the familyFiloviridae if:[13][14]

Family organization

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FamilyFiloviridae: genera, species, and viruses
Genus nameSpecies nameVirus name (abbreviation)
CuevavirusLloviu cuevavirusLloviu virus (LLOV)
DianlovirusMengla dianlovirusMěnglà virus (MLAV)
EbolavirusBombali ebolavirusBombali virus (BOMV)
Bundibugyo ebolavirusBundibugyo virus (BDBV; previously BEBOV)
Reston ebolavirusReston virus (RESTV; previously REBOV)
Sudan ebolavirusSudan virus (SUDV; previously SEBOV)
Taï Forest ebolavirusTaï Forest virus (TAFV; previously CIEBOV)
Zaire ebolavirusEbola virus (EBOV; previously ZEBOV)
MarburgvirusMarburg marburgvirusMarburg virus (MARV)
Ravn virus (RAVV)
StriavirusXilang striavirusXīlǎng virus (XILV)
ThamnovirusHuangjiao thamnovirusHuángjiāo virus (HUJV)

Phylogenetics

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The mutation rates in these genomes have been estimated to be between 0.46 × 10−4 and 8.21 × 10−4 nucleotide substitutions/site/year.[15] The most recent common ancestor of sequenced filovirus variants was estimated to be 1971 (1960–1976) for Ebola virus, 1970 (1948–1987) for Reston virus, and 1969 (1956–1976) for Sudan virus, with the most recent common ancestor among the four species included in the analysis (Ebola virus, Tai Forest virus, Sudan virus, and Reston virus) estimated at 1000–2100 years.[16] The most recent common ancestor of the Marburg and Sudan species appears to have evolved 700 and 850 years before present respectively. Although mutational clocks placed the divergence time of extant filoviruses at ~10,000 years before the present, dating of orthologous endogenous elements (paleoviruses) in the genomes of hamsters and voles indicated that the extant genera of filovirids had a common ancestor at least as old as the Miocene (~16–23 million or so years ago).[17]

Filoviridae cladogram is the following:[18][19]

Filoviridae

Tapjovirus bothropis = Tapajós virus (TAPV)

Striavirus antennarii = Xīlǎng virus (XILV)

Thamnovirus

Thamnovirus percae = Fiwi virus (FIWIV)

Thamnovirus kanderense = Kander virus (KNDV)

Thamnovirus thamnaconi = Huángjiāo virus (HUJV)

Oblavirus percae = Oberland virus (OBLV)

Paleovirology

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Paleoviral elements are known from each of the four main divergent clades of filoviruses. While orthologous elements in mammal genomes support a minimum age for filoviruses of tens of millions of years, the existence of filoviruses and their elements in divergent lineages of fishes suggests that the virus family is hundreds of millions of years old.[20] Paleoviruses that appear to be derived from filovirus-like viruses have been identified in the genomes of many small-bodied species includingbats,rodents,shrews,tenrecs,tarsiers,marsupials[21][22][23] and fishes.[24] Although most filovirus-like elements appear to bepseudogenes, evolutionary and structural analyses suggest thatorthologs isolated from several species of the bat genusMyotis and the rodent family Spalacidae have been maintained by selection.[25][26]

Vaccines

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There are presently very limited vaccines for known filovirus.[27] An effective vaccine against EBOV, developed in Canada,[28] was approved for use in 2019 in the US and Europe.[29][30] Similarly, efforts to develop a vaccine against Marburg virus are under way.[31]

Mutation concerns and pandemic potential

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There has been a pressing concern that a very slight genetic mutation to a filovirus such asEBOV could result in a change in transmission system from direct body fluid transmission to airborne transmission, as was seen in Reston virus (another member of genus Ebolavirus) between infected macaques. A similar change in the current circulating strains of EBOV could greatly increase the infection and disease rates caused by EBOV. However, there is no record of any Ebola strain ever having made this transition in humans.[32]

TheDepartment of Homeland Security’s National Biodefense Analysis and Countermeasures Center considers the risk of a mutatedEbola virus strain with aerosol transmission capability emerging in the future as a serious threat to national security and has collaborated with theCenters for Disease Control and Prevention (CDC) to design methods to detect EBOV aerosols.[33]

References

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  1. ^"Filoviridae".Merriam-Webster.com Dictionary. Merriam-Webster. RetrievedJuly 28, 2018.
  2. ^Kuhn, JH; Amarasinghe, GK; Basler, CF; Bavari, S; Bukreyev, A; Chandran, K; Crozier, I; Dolnik, O; Dye, JM; Formenty, PBH; Griffiths, A; Hewson, R;Kobinger, GP; Leroy, EM; Mühlberger, E; Netesov, SV; Palacios, G; Pályi, B; Pawęska, JT; Smither, SJ; Takada, A; Towner, JS; Wahl, V; ICTV Report, Consortium (June 2019)."ICTV Virus Taxonomy Profile: Filoviridae".The Journal of General Virology.100 (6):911–912.doi:10.1099/jgv.0.001252.PMC 7011696.PMID 31021739.
  3. ^abcKiley MP, Bowen ET, Eddy GA, Isaäcson M, Johnson KM, McCormick JB, Murphy FA, Pattyn SR, Peters D, Prozesky OW, Regnery RL, Simpson DI, Slenczka W, Sureau P, van der Groen G, Webb PA, Wulff H (1982)."Filoviridae: A taxonomic home for Marburg and Ebola viruses?".Intervirology.18 (1–2):24–32.doi:10.1159/000149300.PMID 7118520.
  4. ^US Animal and Plant Health Inspection Service (APHIS) and US Centers for Disease Control and Prevention (CDC)."National Select Agent Registry (NSAR)". Retrieved2011-10-16.
  5. ^US Department of Health and Human Services."Biosafety in Microbiological and Biomedical Laboratories (BMBL) 5th Edition". Retrieved2011-10-16.
  6. ^US National Institutes of Health (NIH), US National Institute of Allergy and Infectious Diseases (NIAID)."Biodefense — NIAID Category A, B, and C Priority Pathogens". Archived fromthe original on 2011-10-22. Retrieved2011-10-16.
  7. ^US Centers for Disease Control and Prevention (CDC)."Bioterrorism Agents/Diseases". Archived fromthe original on July 22, 2014. Retrieved2011-10-16.
  8. ^The Australia Group."List of Biological Agents for Export Control". Archived fromthe original on 2011-08-06. Retrieved2011-10-16.
  9. ^McCormick, J. B. (1991). "Family Filoviridae". In Francki, R. I. B.; Fauquet, C. M.; Knudson, D. L.; et al. (eds.).Classification and Nomenclature of Viruses-Fifth Report of the International Committee on Taxonomy of Viruses. Archives of Virology Supplement. Vol. 2. Vienna, Austria: Springer. pp. 247–49.ISBN 0-387-82286-0.
  10. ^Jahrling, P. B.; Kiley, M. P.; Klenk, H.-D.; Peters, C. J.; Sanchez, A.; Swanepoel, R. (1995). "Family Filoviridae". In Murphy, F. A.; Fauquet, C. M.; Bishop, D. H. L.; Ghabrial, S. A.; Jarvis, A. W.; Martelli, G. P.; Mayo, M. A.; Summers, M. D. (eds.).Virus Taxonomy—Sixth Report of the International Committee on Taxonomy of Viruses. Archives of Virology Supplement. Vol. 10. Vienna, Austria: Springer. pp. 289–92.ISBN 3-211-82594-0.
  11. ^Netesov, S.V.; Feldmann, H.; Jahrling, P. B.; Klenk, H. D.; Sanchez, A. (2000). "Family Filoviridae". In van Regenmortel, M. H. V.; Fauquet, C. M.; Bishop, D. H. L.; Carstens, E. B.; Estes, M. K.; Lemon, S. M.; Maniloff, J.; Mayo, M. A.; McGeoch, D. J.; Pringle, C. R.; Wickner, R. B. (eds.).Virus Taxonomy—Seventh Report of the International Committee on Taxonomy of Viruses. San Diego, USA: Academic Press. pp. 539–48.ISBN 0-12-370200-3.
  12. ^abFeldmann, H.; Geisbert, T. W.; Jahrling, P. B.; Klenk, H.-D.; Netesov, S. V.; Peters, C. J.; Sanchez, A.; Swanepoel, R.; Volchkov, V. E. (2005). "Family Filoviridae". In Fauquet, C. M.; Mayo, M. A.; Maniloff, J.; Desselberger, U.; Ball, L. A. (eds.).Virus Taxonomy—Eighth Report of the International Committee on Taxonomy of Viruses. San Diego, USA: Elsevier/Academic Press. pp. 645–653.ISBN 0-12-370200-3.
  13. ^abcdeKuhn JH, Becker S, Ebihara H, Geisbert TW, Johnson KM, Kawaoka Y, Lipkin WI, Negredo AI, Netesov SV, Nichol ST, Palacios G, Peters CJ, Tenorio A, Volchkov VE, Jahrling PB (2010)."Proposal for a revised taxonomy of the family Filoviridae: Classification, names of taxa and viruses, and virus abbreviations".Archives of Virology.155 (12):2083–2103.doi:10.1007/s00705-010-0814-x.PMC 3074192.PMID 21046175.
  14. ^abcKuhn, J. H.; Becker, S.; Ebihara, H.; Geisbert, T. W.; Jahrling, P. B.; Kawaoka, Y.; Netesov, S. V.; Nichol, S. T.; Peters, C. J.; Volchkov, V. E.; Ksiazek, T. G. (2011). "Family Filoviridae". In King, Andrew M. Q.; Adams, Michael J.; Carstens, Eric B.; et al. (eds.).Virus Taxonomy—Ninth Report of the International Committee on Taxonomy of Viruses. London, UK: Elsevier/Academic Press. pp. 665–671.ISBN 978-0-12-384684-6.
  15. ^Carroll SA, Towner JS, Sealy TK, McMullan LK, Khristova ML, Burt FJ, Swanepoel R, Rollin PE, Nichol ST (March 2013)."Molecular evolution of viruses of the family Filoviridae based on 97 whole-genome sequences".J. Virol.87 (5):2608–16.doi:10.1128/JVI.03118-12.PMC 3571414.PMID 23255795.
  16. ^Li YH, Chen SP (2014)."Evolutionary history of Ebola virus"(PDF).Epidemiol. Infect.142 (6):1138–1145.doi:10.1017/S0950268813002215.PMC 9151191.PMID 24040779.S2CID 9873900.
  17. ^Taylor, D. J.; Ballinger, M. J.; Zhan, J. J.; Hanzly, L. E.; Bruenn, J. A. (2014)."Evidence that ebolaviruses and cuevaviruses have been diverging from marburgviruses since the Miocene".PeerJ.2: e556.doi:10.7717/peerj.556.PMC 4157239.PMID 25237605.
  18. ^Melanie M. Hierweger, Michel C. Koch, Melanie Rupp, Piet Maes, Nicholas Di Paola, Rémy Bruggmann, Jens H. Kuhn, Heike Schmidt-Posthaus & Torsten Seuberlich (2021-11-22)."Novel Filoviruses, Hantavirus, and Rhabdovirus in Freshwater Fish, Switzerland, 2017".Emerging Infectious Diseases.27 (12):3082–3091.doi:10.3201/eid2712.210491.PMC 8632185.PMID 34808081.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  19. ^Biao He, Tingsong Hu, Xiaomin Yan, Fuqiang Zhang, Changchun Tu (2023-08-07)."Detection and characterization of a novel bat filovirus (Dehong virus, DEHV) in fruit bats".bioRxiv.doi:10.1101/2023.08.07.552227.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  20. ^Taylor, Derek J.; Barnhart, Max H. (2024)."Genomic transfers help to decipher the ancient evolution of filoviruses and interactions with vertebrate hosts".PLOS Pathogens.20 (9): e1011864.doi:10.1371/journal.ppat.1011864.PMC 11398700.PMID 39226335.
  21. ^Taylor DJ, Leach RW, Bruenn J (2010)."Filoviruses are ancient and integrated into mammalian genomes".BMC Evolutionary Biology.10 (1): 193.Bibcode:2010BMCEE..10..193T.doi:10.1186/1471-2148-10-193.PMC 2906475.PMID 20569424.
  22. ^Belyi VA, Levine AJ, Skalka AM (2010). Buchmeier (ed.)."Unexpected Inheritance: Multiple Integrations of Ancient Bornavirus and Ebolavirus/Marburgvirus Sequences in Vertebrate Genomes".PLOS Pathogens.6 (7): e1001030.doi:10.1371/journal.ppat.1001030.PMC 2912400.PMID 20686665.
  23. ^Katzourakis A, Gifford RJ (2010)."Endogenous Viral Elements in Animal Genomes".PLOS Genetics.6 (11): e1001191.doi:10.1371/journal.pgen.1001191.PMC 2987831.PMID 21124940.
  24. ^Taylor, Derek J.; Barnhart, Max H. (2024)."Genomic transfers help to decipher the ancient evolution of filoviruses and interactions with vertebrate hosts".PLOS Pathogens.20 (9): e1011864.doi:10.1371/journal.ppat.1011864.PMC 11398700.PMID 39226335.
  25. ^Taylor DJ, Dittmar K, Ballinger MJ, Bruenn JA (2011)."Evolutionary maintenance of filovirus-like genes in bat genomes".BMC Evolutionary Biology.11 (336): 336.Bibcode:2011BMCEE..11..336T.doi:10.1186/1471-2148-11-336.PMC 3229293.PMID 22093762.
  26. ^Taylor, Derek J.; Barnhart, Max H. (2024)."Genomic transfers help to decipher the ancient evolution of filoviruses and interactions with vertebrate hosts".PLOS Pathogens.20 (9): e1011864.doi:10.1371/journal.ppat.1011864.PMC 11398700.PMID 39226335.
  27. ^Peters CJ, LeDuc JW (February 1999)."An Introduction to Ebola: The Virus and the Disease".The Journal of Infectious Diseases.179 (Supplement 1):ix–xvi.doi:10.1086/514322.JSTOR 30117592.PMID 9988154.
  28. ^Plummer, Francis A.; Jones, Steven M. (2017-10-30)."The story of Canada's Ebola vaccine".CMAJ: Canadian Medical Association Journal.189 (43):E1326 –E1327.doi:10.1503/cmaj.170704.ISSN 0820-3946.PMC 5662448.PMID 29084758.
  29. ^Research, Center for Biologics Evaluation and (2020-01-27)."ERVEBO".FDA.
  30. ^CZARSKA-THORLEY, Dagmara (2019-10-16)."Ervebo".European Medicines Agency. Retrieved2020-05-03.
  31. ^Keshwara, Rohan; Hagen, Katie R.; Abreu-Mota, Tiago; Papaneri, Amy B.; Liu, David; Wirblich, Christoph; Johnson, Reed F.; Schnell, Matthias J. (2019-03-05)."A Recombinant Rabies Virus Expressing the Marburg Virus Glycoprotein Is Dependent upon Antibody-Mediated Cellular Cytotoxicity for Protection against Marburg Virus Disease in a Murine Model".Journal of Virology.93 (6).doi:10.1128/JVI.01865-18.ISSN 0022-538X.PMC 6401435.PMID 30567978.
  32. ^Kelland, Kate (19 September 2014)."Scientists see risk of mutant airborne Ebola as remote".Reuters. Retrieved10 October 2014.
  33. ^"Feature Article: New Tech Makes Detecting Airborne Ebola Virus Possible".Department of Homeland Security. 20 April 2021. Retrieved13 December 2021.

Further reading

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  • Klenk, Hans-Dieter (1999).Marburg and Ebola Viruses. Current Topics in Microbiology and Immunology. Vol. 235. Berlin, Germany: Springer-Verlag.ISBN 978-3-540-64729-4.
  • Klenk, Hans-Dieter; Feldmann, Heinz (2004).Ebola and Marburg Viruses—Molecular and Cellular Biology. Wymondham, Norfolk, UK: Horizon Bioscience.ISBN 978-0-9545232-3-7.
  • Kuhn, Jens H. (2008).Filoviruses—A Compendium of 40 Years of Epidemiological, Clinical, and Laboratory Studies. Archives of Virology Supplement. Vol. 20. Vienna, Austria: Springer.ISBN 978-3-211-20670-6.
  • Ryabchikova, Elena I.; Price, Barbara B. (2004).Ebola and Marburg Viruses—A View of Infection Using Electron Microscopy. Columbus, Ohio, USA: Battelle Press.ISBN 978-1-57477-131-2.

External links

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